Factsheet for VIT_02s0025g02250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0141g00220.t01
VIT_10s0003g04670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64620.1	VIT_10s0003g04670.t01	AT1G30490.1	21245844
AT1G64620.1	VIT_07s0141g00220.t01	AT4G02590.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70840	Canola	nucleus	28.12	71.68
VIT_16s0098g01420.t01	Wine grape	nucleus	67.36	67.6
VIT_15s0046g00150.t01	Wine grape	nucleus	55.21	50.32
AT1G64620.1	Thale cress	nucleus	54.17	44.32
CDY08392	Canola	nucleus	50.0	42.6
Bra027722.1-P	Field mustard	nucleus	46.18	41.05
VIT_17s0000g08290.t01	Wine grape	nucleus	38.89	36.36
VIT_06s0004g03420.t01	Wine grape	nucleus	31.25	30.41
VIT_13s0019g01410.t01	Wine grape	nucleus	33.33	28.49
VIT_08s0105g00170.t01	Wine grape	nucleus	25.69	27.41
VIT_06s0004g04520.t01	Wine grape	nucleus	29.51	26.56
VIT_10s0003g00030.t01	Wine grape	nucleus	27.43	26.42
VIT_17s0000g04850.t01	Wine grape	nucleus	28.82	26.1
VIT_18s0001g15730.t01	Wine grape	nucleus	24.65	25.27
VIT_08s0007g00180.t01	Wine grape	nucleus	30.21	25.22
VIT_00s0652g00010.t01	Wine grape	nucleus	23.61	23.05
VIT_10s0003g00040.t01	Wine grape	nucleus	23.96	22.4
VIT_00s0253g00060.t01	Wine grape	nucleus	26.04	21.31
VIT_00s0218g00040.t01	Wine grape	nucleus	21.88	18.64

Protein Annotations

EntrezGene:100266812	wikigene:100266812	MapMan:15.5.1.5	ProteinID:CCB58281	ProteinID:CCB58281.1	UniProt:F6HU58
EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	InterPro:IPR003851
EntrezGene:LOC100266812	wikigene:LOC100266812	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF42	TIGR:TC69791	UniParc:UPI0001982D46	ArrayExpress:VIT_02s0025g02250	EnsemblPlantsGene:VIT_02s0025g02250
EnsemblPlants:VIT_02s0025g02250.t01	unigene:Vvi.8479	RefSeq:XP_002262703	RefSeq:XP_002262703.1	InterPro:Znf_Dof	SEG:seg

Description

No Description!

Coordinates

chr2:+:2012768..2014765

Molecular Weight (calculated)

31412.5 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.671

Length

288 amino acids

Sequence
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPALEK RARPQKEQAL NCPRCNSTNT KFCYYNNYSL SQPRYFCKAC RRYWTEGGSL RNIPVGGGSR KNKRSSSSSS
101: SSSSSASSKK LPDLVPPGCS QSSAQNPKIH EGQDLNLSFP AAQDFRSVSE FMQMPSIENS NNNTNNSSKS HITSTSSTSS HLSALELLTG ITSRGLNSFM
201: PMPIPDPNTV YTTGFPMQEF KPTLNFSLDG LGSGYGSIQG VQGSSSGRLL FPFEDLKQVS STADHIEQTR EQGDSTGYWT GMLGGGSW

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.