Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g04670.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G28810.1 | VIT_10s0003g04670.t01 | AT2G34710.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 60.31 | 57.27 |
| KRH24808 | Soybean | nucleus | 54.69 | 57.0 |
| KRH10276 | Soybean | nucleus | 50.62 | 53.29 |
| KRH23056 | Soybean | nucleus | 43.12 | 51.3 |
| VIT_08s0007g00180.t01 | Wine grape | nucleus | 55.0 | 51.01 |
| KRH29808 | Soybean | nucleus, plastid | 50.94 | 48.66 |
| PGSC0003DMT400060216 | Potato | nucleus | 43.12 | 45.7 |
| Solyc05g054510.1.1 | Tomato | nucleus | 41.25 | 44.3 |
| Bra030696.1-P | Field mustard | nucleus | 41.88 | 40.12 |
| CDY15624 | Canola | nucleus | 41.56 | 39.82 |
| AT2G28810.1 | Thale cress | nucleus | 41.88 | 39.41 |
| CDX95139 | Canola | nucleus | 40.94 | 38.99 |
| CDY06274 | Canola | nucleus | 37.81 | 38.53 |
| CDX77212 | Canola | nucleus | 40.94 | 38.53 |
| Bra031588.1-P | Field mustard | nucleus | 38.12 | 38.49 |
| CDY61965 | Canola | nucleus | 37.19 | 38.26 |
| CDY31735 | Canola | nucleus | 40.94 | 38.08 |
| Bra035667.1-P | Field mustard | nucleus | 40.94 | 38.08 |
| AT1G07640.3 | Thale cress | nucleus | 40.31 | 38.05 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 26.88 | 29.97 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 26.56 | 29.51 |
| VIT_10s0003g00040.t01 | Wine grape | nucleus | 27.5 | 28.57 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 25.94 | 28.14 |
| VIT_06s0004g03420.t01 | Wine grape | nucleus | 25.94 | 28.04 |
| VIT_17s0000g04850.t01 | Wine grape | nucleus | 24.06 | 24.21 |
| VIT_10s0003g00030.t01 | Wine grape | nucleus | 22.5 | 24.08 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 23.44 | 23.73 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 24.69 | 23.37 |
| VIT_08s0105g00170.t01 | Wine grape | nucleus | 19.69 | 23.33 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 22.19 | 23.05 |
| VIT_00s0253g00060.t01 | Wine grape | nucleus | 23.75 | 21.59 |
| VIT_18s0001g15730.t01 | Wine grape | nucleus | 16.88 | 19.22 |
Protein Annotations
| EntrezGene:100246640 | wikigene:100246640 | MapMan:15.5.1.5 | EMBL:AM428113 | ProteinID:CAN60303 | ProteinID:CAN60303.1 |
| ProteinID:CCB43582 | ProteinID:CCB43582.1 | UniProt:F6GV23 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | EntrezGene:LOC100246640 | wikigene:LOC100246640 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF61 | UniParc:UPI0001983615 | ArrayExpress:VIT_06s0004g04520 | EnsemblPlantsGene:VIT_06s0004g04520 |
| EnsemblPlants:VIT_06s0004g04520.t01 | RefSeq:XP_002281144 | RefSeq:XP_002281144.1 | InterPro:Znf_Dof | SEG:seg | : |
Description
No Description!
Coordinates
chr6:+:5492077..5493425
Molecular Weight (calculated)
34715.7 Da
IEP (calculated)
9.632
GRAVY (calculated)
-0.627
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSVPLYP DPLNWQQQPN RQEGSGNENP QLPPPPPQAG SLGSIRPGSM ADRARVAKIP QPETALKCPR CESTNTKFCY FNNYSLTQPR HFCKTCRRYW
101: TRGGALRNVP VGGGCRRNKK SKSSSSKSPA STERHAGSNS TSAIPSSGTA EIIGHLPKQA SQLPFMPTLQ NLTQYGIGNM SLNFGGNLPH VMASSGGGQN
201: EMGFHIGSNS VGLSAEGVEQ WRLQQVQQFP FLGSFEPPTG LYPFQNEDVK ASSSVDRNGH LPHMVSGSGV AQLTAVKLLE NQGLNLSRQF LDTSENNQYW
301: VGNAWTDFSG LNSSSTSNRL
101: TRGGALRNVP VGGGCRRNKK SKSSSSKSPA STERHAGSNS TSAIPSSGTA EIIGHLPKQA SQLPFMPTLQ NLTQYGIGNM SLNFGGNLPH VMASSGGGQN
201: EMGFHIGSNS VGLSAEGVEQ WRLQQVQQFP FLGSFEPPTG LYPFQNEDVK ASSSVDRNGH LPHMVSGSGV AQLTAVKLLE NQGLNLSRQF LDTSENNQYW
301: VGNAWTDFSG LNSSSTSNRL
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.