Factsheet for VIT_10s0003g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10904	Soybean	nucleus	44.48	42.49
PGSC0003DMT400076397	Potato	nucleus	40.47	42.46
KRH21403	Soybean	nucleus	44.82	42.27
Solyc02g077960.1.1	Tomato	nucleus	41.14	41.14
VIT_16s0098g01420.t01	Wine grape	nucleus	28.76	29.97
VIT_06s0004g03420.t01	Wine grape	nucleus	27.42	27.7
VIT_02s0025g02250.t01	Wine grape	nucleus	26.42	27.43
VIT_15s0046g00150.t01	Wine grape	nucleus	26.09	24.68
VIT_13s0019g01410.t01	Wine grape	nucleus	26.42	23.44
VIT_17s0000g08290.t01	Wine grape	nucleus	24.08	23.38
VIT_08s0105g00170.t01	Wine grape	nucleus	20.74	22.96
VIT_08s0007g00180.t01	Wine grape	nucleus	26.42	22.9
VIT_06s0004g04520.t01	Wine grape	nucleus	24.08	22.5
VIT_00s0652g00010.t01	Wine grape	nucleus	22.07	22.37
VIT_17s0000g04850.t01	Wine grape	nucleus	23.08	21.7
VIT_10s0003g00040.t01	Wine grape	nucleus	22.07	21.43
VIT_18s0001g15730.t01	Wine grape	nucleus	19.06	20.28
VIT_00s0253g00060.t01	Wine grape	nucleus	22.07	18.75
VIT_00s0218g00040.t01	Wine grape	nucleus	19.73	17.46

Protein Annotations

EntrezGene:100246919	wikigene:100246919	MapMan:15.5.1.5	EMBL:AM431127	ProteinID:CAN78117	ProteinID:CAN78117.1
ProteinID:CBI30589	ProteinID:CBI30589.3	UniProt:D7TJB7	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EntrezGene:LOC100246919	wikigene:LOC100246919	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF64	UniParc:UPI00015CCDEE	ArrayExpress:VIT_10s0003g00030	EnsemblPlantsGene:VIT_10s0003g00030
EnsemblPlants:VIT_10s0003g00030.t01	RefSeq:XP_002274050	RefSeq:XP_002274050.1	RefSeq:XP_019077995.1	InterPro:Znf_Dof	SEG:seg

Description

No Description!

Coordinates

chr10:+:1318306..1319562

Molecular Weight (calculated)

32669.8 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.910

Length

299 amino acids

Sequence
(BLAST)

001: MQQDRDKGGG LEDVDPPDRR LKPAQSENQQ QQLPQKCPRC DSINTKFCYY NNYSLSQPRY FCKTCRRYWT QGGTLRNVPV GGGCRKTKRK PSASGDNSRS
101: QLPTQQQQQN LAAPPPNIIS TNSGVAVGPA LRIAEPANLS PAPAPASAPT LSSVNPYYPA GAFLSSLPAM RPLNQPQPQP FNQPVNVGRD FGGSNLAILQ
201: GFNVPSLGSQ QQQRQQAEFY QMGNRDRNIE SLYGSGEDLI QSSRPTGHQN NWHQTFINPT APDSNLWSIG GSSNNNSNAA SSSFNQNHWA DLQGYGPPP

Best Arabidopsis Sequence Match ( AT5G60850.1 )
(BLAST)

001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP

Arabidopsis Description

DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.