Factsheet for VIT_08s0105g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96269	Soybean	nucleus	32.59	51.16
KRG96256	Soybean	nucleus	45.19	45.02
KRH72174	Soybean	nucleus	47.41	43.84
KRH32857	Soybean	extracellular, vacuole	48.15	38.69
CDY29082	Canola	nucleus	34.07	38.33
Bra012804.1-P	Field mustard	nucleus	34.07	38.17
CDX90602	Canola	nucleus	34.07	38.17
CDX78095	Canola	nucleus	33.7	37.6
Bra006923.1-P	Field mustard	nucleus	33.33	37.19
CDY59600	Canola	nucleus	32.96	36.48
PGSC0003DMT400055052	Potato	nucleus	41.11	35.46
AT3G52440.2	Thale cress	nucleus	33.7	34.21
GSMUA_Achr5P01010_001	Banana	nucleus	32.22	33.59
VIT_18s0001g15730.t01	Wine grape	nucleus	31.85	30.61
VIT_16s0098g01420.t01	Wine grape	nucleus	27.78	26.13
VIT_02s0025g02250.t01	Wine grape	nucleus	27.41	25.69
VIT_15s0046g00150.t01	Wine grape	nucleus	29.26	25.0
VIT_06s0004g03420.t01	Wine grape	nucleus	27.04	24.66
VIT_10s0003g00030.t01	Wine grape	nucleus	22.96	20.74
VIT_17s0000g08290.t01	Wine grape	nucleus	23.33	20.45
VIT_06s0004g04520.t01	Wine grape	nucleus	23.33	19.69
VIT_00s0652g00010.t01	Wine grape	nucleus	21.11	19.32
VIT_10s0003g00040.t01	Wine grape	nucleus	21.85	19.16
VIT_13s0019g01410.t01	Wine grape	nucleus	23.7	18.99
VIT_17s0000g04850.t01	Wine grape	nucleus	22.22	18.87
VIT_00s0218g00040.t01	Wine grape	nucleus	22.59	18.05
VIT_08s0007g00180.t01	Wine grape	nucleus	22.96	17.97
VIT_00s0253g00060.t01	Wine grape	nucleus	21.85	16.76

Protein Annotations

EntrezGene:104880004	MapMan:15.5.1.5	EMBL:AM451060	ProteinID:CAN82980	ProteinID:CAN82980.1	ProteinID:CBI22780
ProteinID:CBI22780.3	UniProt:D7SXZ7	EMBL:FN595245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF73
UniParc:UPI0001983CC1	ArrayExpress:VIT_08s0105g00170	EnsemblPlantsGene:VIT_08s0105g00170	EnsemblPlants:VIT_08s0105g00170.t01	RefSeq:XP_010653316.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:7109736..7110548

Molecular Weight (calculated)

29630.5 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.552

Length

270 amino acids

Sequence
(BLAST)

001: MEGGVWKANV EISPNCPRCG SSNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK SFRILTDRLA SKGLASDPDP DPSGSALADS
101: ATTSSGLHDA SASNIDLALV YANFLNQMPE PKSTGFEMPE LPCEFHPSFQ LSSTLSTSNT SLDSSHIQLP PDTHLSEDNQ VYLSGFHPIH THHDHDSANI
201: YGLPPLPGQE VASPEMLWPI SQAMVQNQTL HETQLPALHP EAAQHPNHVA VTAGNWSPFD LSCYETFSRP

Best Arabidopsis Sequence Match ( AT3G52440.1 )
(BLAST)

001: MERAEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPV GGGCRKSRRP KSSSGNNTKT SLTANSGNPG
101: GGSPSIDLAL VYANFLNPKP DESILQENCD LATTDFLVDN PTGTSMDPSW SMDINDGHHD HYINPVEHIV EECGYNGLPP FPGEELLSLD TNGVWSDALL
201: IGHNHVDVGV TPVQAVHEPV VHFADESNDS TNLLFGSWSP FDFTADG

Arabidopsis Description

Dof-type zinc finger DNA-binding family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.