Factsheet for VIT_16s0098g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g02250.t01	Wine grape	nucleus	67.6	67.36
KRH64383	Soybean	nucleus	69.34	67.0
KRH53547	Soybean	nucleus	45.64	63.59
VIT_15s0046g00150.t01	Wine grape	nucleus	56.45	51.27
PGSC0003DMT400031928	Potato	nucleus	57.49	49.7
Solyc08g082910.1.1	Tomato	nucleus	54.01	48.74
GSMUA_Achr5P15160_001	Banana	nucleus	42.86	42.12
CDY51722	Canola	nucleus	35.89	37.05
AT4G00940.2	Thale cress	nucleus	37.63	36.73
CDY07156	Canola	nucleus	35.54	36.56
Bra037401.1-P	Field mustard	nucleus	36.24	34.9
VIT_17s0000g08290.t01	Wine grape	nucleus	36.24	33.77
VIT_06s0004g03420.t01	Wine grape	nucleus	32.06	31.08
VIT_10s0003g00030.t01	Wine grape	nucleus	29.97	28.76
VIT_08s0105g00170.t01	Wine grape	nucleus	26.13	27.78
VIT_13s0019g01410.t01	Wine grape	nucleus	32.06	27.3
VIT_06s0004g04520.t01	Wine grape	nucleus	29.97	26.88
VIT_08s0007g00180.t01	Wine grape	nucleus	31.71	26.38
VIT_18s0001g15730.t01	Wine grape	nucleus	25.78	26.33
VIT_17s0000g04850.t01	Wine grape	nucleus	28.92	26.1
VIT_10s0003g00040.t01	Wine grape	nucleus	24.74	23.05
VIT_00s0652g00010.t01	Wine grape	nucleus	23.69	23.05
VIT_00s0253g00060.t01	Wine grape	nucleus	26.83	21.88
VIT_00s0218g00040.t01	Wine grape	nucleus	23.69	20.12

Protein Annotations

EntrezGene:100264143	wikigene:100264143	MapMan:15.5.1.5	ProteinID:CCB48064	ProteinID:CCB48064.1	UniProt:F6H7D0
EMBL:FN595247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EntrezGene:LOC100264143	wikigene:LOC100264143
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF42
TIGR:TC69226	UniParc:UPI0001984FFC	ArrayExpress:VIT_16s0098g01420	EnsemblPlantsGene:VIT_16s0098g01420	EnsemblPlants:VIT_16s0098g01420.t01	unigene:Vvi.18093
RefSeq:XP_002275610	RefSeq:XP_002275610.1	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:-:21635846..21637912

Molecular Weight (calculated)

31141.0 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.710

Length

287 amino acids

Sequence
(BLAST)

001: MDTAQWPQGI GVVKPMESSG PVAERRARPQ KDQALNCPRC NSTNTKFCYY NNYSLSQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS TSSSSSSSSP
101: ASSKKLLPDH LITSTPPGFP SSASQNPKIH EGQDLNLAFP PPPEDYNNSI SEFADLSYNG DSKPHLQNPT PSSSSSHHHL SAMELLKSTG IASRGLGSFM
201: PMSVSDSNSI YSSGFPLQEF KPTLNFSLDG FQSGYGSLQG VQESGARLLF PLEDLKQVSN TTEFEQSRGV QGDSAGYWNG MLGGGSW

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.