Factsheet for Solyc08g082910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031928	Potato	nucleus	91.51	87.65
VIT_16s0098g01420.t01	Wine grape	nucleus	48.74	54.01
KRH64383	Soybean	nucleus	47.17	50.51
KRH53547	Soybean	nucleus	32.7	50.49
Solyc01g096120.2.1	Tomato	nucleus	38.68	44.57
Solyc03g082840.2.1	Tomato	nucleus	35.85	44.19
Solyc10g009360.2.1	Tomato	nucleus	34.59	42.15
CDY51722	Canola	nucleus	31.45	35.97
CDY07156	Canola	nucleus	31.13	35.48
AT4G00940.2	Thale cress	nucleus	32.7	35.37
GSMUA_Achr5P15160_001	Banana	nucleus	32.39	35.27
Bra037401.1-P	Field mustard	nucleus	32.08	34.23
Solyc06g071480.2.1	Tomato	nucleus	26.42	30.11
Solyc06g075370.2.1	Tomato	nucleus	25.47	26.73
Solyc11g072500.1.1	Tomato	nucleus	22.64	25.26
Solyc03g112930.2.1	Tomato	nucleus	25.79	24.62
Solyc04g070960.1.1	Tomato	nucleus	19.18	22.85
Solyc02g090310.1.1	Tomato	nucleus	18.24	22.31
Solyc05g054510.1.1	Tomato	nucleus	20.44	21.81
Solyc06g076030.2.1	Tomato	nucleus	22.01	20.96
Solyc02g077960.1.1	Tomato	nucleus	19.5	20.74
Solyc11g010940.1.1	Tomato	nucleus	23.58	20.0
Solyc06g005130.2.1	Tomato	nucleus	19.18	19.81
Solyc02g077950.1.1	Tomato	nucleus	23.58	19.79
Solyc10g086440.1.1	Tomato	nucleus	22.33	19.61
Solyc02g078620.1.1	Tomato	nucleus	17.3	19.37
Solyc11g066050.1.1	Tomato	nucleus	18.24	18.18
Solyc09g010680.2.1	Tomato	nucleus	21.38	17.09

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4CPT7	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF15	EnsemblPlantsGene:Solyc08g082910.1
EnsemblPlants:Solyc08g082910.1.1	UniParc:UPI000276CACF	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:65566664..65568361

Molecular Weight (calculated)

35222.7 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.832

Length

318 amino acids

Sequence
(BLAST)

001: MDTSQWPQEI VMKPMEDIIG NTSKPTNCVE RKLVRPQKDQ VVNCPRCNST NTKFCYYNNY SLSQPRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKKSSSP
101: YNHHVIVNNK KLPDLVVPPP QPDNIEEYPE RHFGNRPHDQ NPSKIILEGS QDLNLGFSSD FKTITDLIQV PNYDGSNKDN NNISTILPPP SSSSSASSPS
201: QLSVMELING ITNNNNNNNN NSFMTMPNSV YNSSGFSLMP SLNFSLDHGI GNDVHHSSSY GNNNNNLQDT NANGRFLFPF VGLKQVSNNT SDGGANEPSL
301: GDQSTNGYWN GMLGGGSW

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.