Factsheet for Solyc03g112930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046598	Potato	nucleus	93.39	94.24
Solyc06g071480.2.1	Tomato	nucleus	52.55	62.72
GSMUA_Achr10P...	Banana	nucleus	33.03	42.64
GSMUA_Achr2P23020_001	Banana	nucleus	32.43	39.27
Zm00001d017788_P001	Maize	nucleus	33.93	39.24
TraesCS6D01G254200.1	Wheat	nucleus	35.14	38.24
TraesCS6A01G274000.1	Wheat	nucleus	35.14	38.24
TraesCS6B01G301500.1	Wheat	nucleus	34.83	37.91
EES05649	Sorghum	nucleus	33.33	37.63
Os02t0707200-00	Rice	nucleus	32.13	37.15
Zm00001d051577_P001	Maize	nucleus	33.03	37.04
Solyc03g082840.2.1	Tomato	nucleus	23.12	29.84
Solyc01g096120.2.1	Tomato	nucleus	22.82	27.54
Solyc11g072500.1.1	Tomato	nucleus	23.12	27.02
Solyc10g009360.2.1	Tomato	nucleus	21.02	26.82
GSMUA_Achr1P20550_001	Banana	nucleus	21.32	26.3
Solyc08g082910.1.1	Tomato	nucleus	24.62	25.79
Solyc06g075370.2.1	Tomato	nucleus	23.42	25.74
Solyc02g090310.1.1	Tomato	nucleus	18.32	23.46
Solyc04g070960.1.1	Tomato	nucleus	18.62	23.22
Solyc05g054510.1.1	Tomato	nucleus	20.42	22.82
Solyc02g077960.1.1	Tomato	nucleus	19.52	21.74
Solyc10g086440.1.1	Tomato	nucleus	22.22	20.44
Solyc06g076030.2.1	Tomato	nucleus	19.82	19.76
Solyc06g005130.2.1	Tomato	nucleus	18.02	19.48
Solyc11g066050.1.1	Tomato	nucleus	17.72	18.5
Solyc02g078620.1.1	Tomato	nucleus	15.62	18.31
Solyc11g010940.1.1	Tomato	nucleus	19.52	17.33
Solyc09g010680.2.1	Tomato	nucleus	20.12	16.83
Solyc02g077950.1.1	Tomato	nucleus	18.92	16.62

Protein Annotations

MapMan:15.5.1.5	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009987	GO:GO:0010067	GO:GO:0010087	GO:GO:0045893	InterPro:IPR003851	UniProt:K4BKE6
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF80
EnsemblPlantsGene:Solyc03g112930.2	EnsemblPlants:Solyc03g112930.2.1	UniParc:UPI0002767866	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:63221882..63223966

Molecular Weight (calculated)

36692.8 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.647

Length

333 amino acids

Sequence
(BLAST)

001: MGITSLQVCM DSSDWLQGTI HEDCAGGMDS SSSPSGGDHI NNLMTCSRPI IVDQRRLRPP HDHSIKCPRC DSTHTKFCYY NNYSLTQPRY FCKTCRRYWT
101: KGGTLRNIPV GGGCRKNKKV SSKKSSTNTN ESIPLSTTTT TNNNNIPEMP FPHHFMSSTN FGHHGNFMLE NQAPIIDFME SKYEALVGSS SSTTTNSRLL
201: NQDLFLGNGD NNNNIGMMMM SGSTSTNGFG HDHDNIVATN YPFGITSIMD SSNNGNSFGM LLPYENHHEE VQNINAVEMK PNPKILSLEW HDDQLGSNKE
301: SSFGYYSGNG GLGSWTGLMN GNCYGSSATN PLV

Best Arabidopsis Sequence Match ( AT5G62940.1 )
(BLAST)

001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV

Arabidopsis Description

DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.