Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112930.2.1 | Tomato | nucleus | 94.24 | 93.39 |
| PGSC0003DMT400069680 | Potato | nucleus | 53.03 | 62.5 |
| GSMUA_Achr10P... | Banana | nucleus | 33.64 | 43.02 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 32.73 | 39.27 |
| Zm00001d017788_P001 | Maize | nucleus | 33.33 | 38.19 |
| EES05649 | Sorghum | nucleus | 33.33 | 37.29 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 34.55 | 37.25 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 34.55 | 37.25 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 34.24 | 36.93 |
| Os02t0707200-00 | Rice | nucleus | 32.12 | 36.81 |
| Zm00001d051577_P001 | Maize | nucleus | 33.03 | 36.7 |
| PGSC0003DMT400047705 | Potato | nucleus | 23.94 | 30.27 |
| PGSC0003DMT400048612 | Potato | nucleus | 22.42 | 27.31 |
| PGSC0003DMT400000349 | Potato | nucleus | 21.52 | 26.79 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 21.21 | 25.93 |
| PGSC0003DMT400065271 | Potato | nucleus | 23.33 | 25.75 |
| PGSC0003DMT400019416 | Potato | nucleus | 23.03 | 25.17 |
| PGSC0003DMT400031928 | Potato | nucleus | 25.15 | 25.0 |
| PGSC0003DMT400058729 | Potato | nucleus | 14.24 | 23.86 |
| PGSC0003DMT400002060 | Potato | nucleus | 18.79 | 23.31 |
| PGSC0003DMT400033382 | Potato | nucleus | 18.18 | 23.26 |
| PGSC0003DMT400010397 | Potato | nucleus | 21.52 | 22.26 |
| PGSC0003DMT400076397 | Potato | nucleus | 19.09 | 22.11 |
| PGSC0003DMT400025984 | Potato | nucleus | 18.48 | 21.79 |
| PGSC0003DMT400060216 | Potato | nucleus | 19.7 | 21.52 |
| PGSC0003DMT400001174 | Potato | nucleus | 16.06 | 20.7 |
| PGSC0003DMT400075051 | Potato | nucleus | 18.18 | 20.62 |
| PGSC0003DMT400049288 | Potato | nucleus | 23.03 | 20.32 |
| PGSC0003DMT400078164 | Potato | nucleus | 19.7 | 20.31 |
| PGSC0003DMT400055052 | Potato | nucleus | 18.79 | 19.81 |
| PGSC0003DMT400057782 | Potato | mitochondrion | 15.45 | 18.09 |
| PGSC0003DMT400076447 | Potato | nucleus | 20.91 | 17.34 |
| PGSC0003DMT400041580 | Potato | nucleus | 19.09 | 16.67 |
| PGSC0003DMT400023033 | Potato | nucleus | 20.0 | 16.38 |
Protein Annotations
| EntrezGene:102596859 | MapMan:15.5.1.5 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010067 | GO:GO:0010087 | GO:GO:0045893 | InterPro:IPR003851 |
| UniProt:M1BJB3 | PFAM:PD007478 | PFAM:PF02701 | EnsemblPlantsGene:PGSC0003DMG400018090 | PGSC:PGSC0003DMG400018090 | EnsemblPlants:PGSC0003DMT400046598 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | UniParc:UPI000295594D | RefSeq:XP_006344507.1 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018090]
Coordinates
chr3:-:52732337..52734480
Molecular Weight (calculated)
36328.4 Da
IEP (calculated)
6.820
GRAVY (calculated)
-0.620
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGITSLQVCM DSSDWLQGTI HEDCAAGGGG MDSSSSPSGG DHINNLMTCS RPIIVDQRRL RPPHDYSIKC PRCDSTHTKF CYYNNYSLTQ PRYFCKTCRR
101: YWTKGGTLRN IPVGGGCRKN KKVSSKKSST NTNESTPLST TTTNNNNIPE MPFPHHFMSS TNFGHHGNFM LENQAPIIDF MESKYEALVG SSSTTTNSRL
201: NQDLFLGNCD NNNIGMMMMS GNSSTTGFVH DNNIVATNYP FGITSTMDNI GNNFGMLLPY EDHHHEEVQN INAVDVKPNP KILSLEWHDD QLGGNKESSF
301: GYYSGNGGLG SWTGLMNGNC YGSSATNPLV
101: YWTKGGTLRN IPVGGGCRKN KKVSSKKSST NTNESTPLST TTTNNNNIPE MPFPHHFMSS TNFGHHGNFM LENQAPIIDF MESKYEALVG SSSTTTNSRL
201: NQDLFLGNCD NNNIGMMMMS GNSSTTGFVH DNNIVATNYP FGITSTMDNI GNNFGMLLPY EDHHHEEVQN INAVDVKPNP KILSLEWHDD QLGGNKESSF
301: GYYSGNGGLG SWTGLMNGNC YGSSATNPLV
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.