Factsheet for PGSC0003DMT400076397

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g077960.1.1	Tomato	nucleus	93.68	89.3
VIT_10s0003g00030.t01	Wine grape	nucleus	42.46	40.47
KRH10904	Soybean	nucleus	38.6	35.14
KRH21403	Soybean	nucleus	38.25	34.38
PGSC0003DMT400058729	Potato	nucleus	17.89	25.89
PGSC0003DMT400047705	Potato	nucleus	23.16	25.29
PGSC0003DMT400019416	Potato	nucleus	26.67	25.17
PGSC0003DMT400065271	Potato	nucleus	26.32	25.08
PGSC0003DMT400033382	Potato	nucleus	22.46	24.81
PGSC0003DMT400000349	Potato	nucleus	22.46	24.15
PGSC0003DMT400048612	Potato	nucleus	22.46	23.62
PGSC0003DMT400002060	Potato	nucleus	20.7	22.18
PGSC0003DMT400075051	Potato	nucleus	22.11	21.65
PGSC0003DMT400001174	Potato	nucleus	19.3	21.48
PGSC0003DMT400025984	Potato	nucleus	21.05	21.43
PGSC0003DMT400069680	Potato	nucleus	21.05	21.43
PGSC0003DMT400010397	Potato	nucleus	22.81	20.38
PGSC0003DMT400078164	Potato	nucleus	22.46	20.0
PGSC0003DMT400031928	Potato	nucleus	22.81	19.58
PGSC0003DMT400060216	Potato	nucleus	20.7	19.54
PGSC0003DMT400057782	Potato	mitochondrion	18.95	19.15
PGSC0003DMT400046598	Potato	nucleus	22.11	19.09
PGSC0003DMT400055052	Potato	nucleus	20.7	18.85
PGSC0003DMT400049288	Potato	nucleus	22.81	17.38
PGSC0003DMT400023033	Potato	nucleus	23.51	16.63
PGSC0003DMT400041580	Potato	nucleus	20.7	15.61
PGSC0003DMT400076447	Potato	nucleus	21.4	15.33

Protein Annotations

EntrezGene:102584268	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1CWN8
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400029708	PGSC:PGSC0003DMG400029708	EnsemblPlants:PGSC0003DMT400076397	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF64	UniParc:UPI0002966B26	RefSeq:XP_006347016.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029708]

Coordinates

chr2:-:33732665..33733954

Molecular Weight (calculated)

31061.8 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.940

Length

285 amino acids

Sequence
(BLAST)

001: MEDQLGGRSS GENDRNRRMK MPENNSSSPA QPPLQKCPRC DSNNTKFCYY NNYSLTQPRY FCKTCRRYWT QGGTLRNVPV GGGCRKGKRT MKGGGSSSSA
101: GESSSRSHHQ ILHPPQIPNL SAAFFSGNNS RSQPPPLPSM SSLYTGGGGF LSSLAAMQSL SQLSQGINNQ SQLGLVSGSN NNNNQFGNFN IPTPPPPPKV
201: QISQQMESTG FYQKPNLESS FYPSDQTLQF QPTRPLGSWT QRFINNNNNN NIWQNSSASS SSAAGASLDP NDHQWPDLPG FGPSP

Best Arabidopsis Sequence Match ( AT5G60850.1 )
(BLAST)

001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP

Arabidopsis Description

DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.