Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400030829 | |
| PGSC0003DMT400054421 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G28810.1 | PGSC0003DMT400030829 | AT2G34710.1 | 21245844 |
| AT2G28810.1 | PGSC0003DMT400054421 | AT2G34710.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g054510.1.1 | Tomato | nucleus | 88.41 | 89.6 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 45.7 | 43.12 |
| KRH24808 | Soybean | nucleus | 42.38 | 41.69 |
| KRH23056 | Soybean | nucleus | 35.76 | 40.15 |
| KRH10276 | Soybean | nucleus | 39.74 | 39.47 |
| PGSC0003DMT400078164 | Potato | nucleus | 40.4 | 38.12 |
| KRH29808 | Soybean | nucleus, plastid | 41.72 | 37.61 |
| PGSC0003DMT400049288 | Potato | nucleus | 40.4 | 32.62 |
| Bra030696.1-P | Field mustard | nucleus | 35.43 | 32.04 |
| CDY15624 | Canola | nucleus | 35.43 | 32.04 |
| CDX77212 | Canola | nucleus | 35.1 | 31.18 |
| AT2G28810.1 | Thale cress | nucleus | 34.77 | 30.88 |
| CDY31735 | Canola | nucleus | 35.1 | 30.81 |
| Bra035667.1-P | Field mustard | nucleus | 35.1 | 30.81 |
| PGSC0003DMT400023033 | Potato | nucleus | 40.4 | 30.27 |
| CDX95139 | Canola | nucleus | 33.44 | 30.06 |
| AT1G07640.3 | Thale cress | nucleus | 33.11 | 29.5 |
| CDY61965 | Canola | nucleus | 30.13 | 29.26 |
| Bra031588.1-P | Field mustard | nucleus | 30.13 | 28.71 |
| CDY06274 | Canola | nucleus | 29.14 | 28.03 |
| PGSC0003DMT400058729 | Potato | nucleus | 16.89 | 25.89 |
| PGSC0003DMT400001174 | Potato | nucleus | 21.52 | 25.39 |
| PGSC0003DMT400047705 | Potato | nucleus | 21.85 | 25.29 |
| PGSC0003DMT400019416 | Potato | nucleus | 25.17 | 25.17 |
| PGSC0003DMT400033382 | Potato | nucleus | 20.53 | 24.03 |
| PGSC0003DMT400025984 | Potato | nucleus | 22.19 | 23.93 |
| PGSC0003DMT400069680 | Potato | nucleus | 21.52 | 23.21 |
| PGSC0003DMT400048612 | Potato | nucleus | 20.2 | 22.51 |
| PGSC0003DMT400065271 | Potato | nucleus | 22.19 | 22.41 |
| PGSC0003DMT400041580 | Potato | nucleus | 27.48 | 21.96 |
| PGSC0003DMT400057782 | Potato | mitochondrion | 20.2 | 21.63 |
| PGSC0003DMT400010397 | Potato | nucleus | 22.19 | 21.0 |
| PGSC0003DMT400031928 | Potato | nucleus | 22.85 | 20.78 |
| PGSC0003DMT400076397 | Potato | nucleus | 19.54 | 20.7 |
| PGSC0003DMT400000349 | Potato | nucleus | 17.88 | 20.38 |
| PGSC0003DMT400046598 | Potato | nucleus | 21.52 | 19.7 |
| PGSC0003DMT400002060 | Potato | nucleus | 17.22 | 19.55 |
| PGSC0003DMT400076447 | Potato | nucleus | 24.5 | 18.59 |
| PGSC0003DMT400055052 | Potato | nucleus | 19.21 | 18.53 |
| PGSC0003DMT400075051 | Potato | nucleus | 16.56 | 17.18 |
Protein Annotations
| EntrezGene:102598708 | MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:M1C5E8 |
| PFAM:PD007478 | PFAM:PF02701 | EnsemblPlantsGene:PGSC0003DMG400023426 | PGSC:PGSC0003DMG400023426 | EnsemblPlants:PGSC0003DMT400060216 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | UniParc:UPI0002965D34 | RefSeq:XP_006346013.1 | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023426]
Coordinates
chr5:-:50266165..50267776
Molecular Weight (calculated)
33821.1 Da
IEP (calculated)
9.826
GRAVY (calculated)
-0.852
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSSIPFYL DPPNWHHEQG NHHQQQQQQL GVTNGNSSQL SPAVLPPPEA ATSPGGGGGP AGSIKSGSIT ERARLAKITQ PETALNCPRC ESTNTKFCYF
101: NNYNLSQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNNKR SSSKRTRSSK SPIRSERSRN VPIITSNSTT TTTFPSHFPP PSTHLSFLNT PFHNFNHFNS
201: TQNGLNFGEI QPHEGDATFV DQFRHQQMQQ FSFFSPLEQP SNLYPIYSEF GISHHDLENV KVEENKSSTS TQGMNLQRNN NLGVNQFWTN YNISSTSTSQ
301: LL
101: NNYNLSQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNNKR SSSKRTRSSK SPIRSERSRN VPIITSNSTT TTTFPSHFPP PSTHLSFLNT PFHNFNHFNS
201: TQNGLNFGEI QPHEGDATFV DQFRHQQMQQ FSFFSPLEQP SNLYPIYSEF GISHHDLENV KVEENKSSTS TQGMNLQRNN NLGVNQFWTN YNISSTSTSQ
301: LL
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.