Factsheet for PGSC0003DMT400055052

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96269	Soybean	nucleus	25.56	46.51
VIT_08s0105g00170.t01	Wine grape	nucleus	35.46	41.11
KRG96256	Soybean	nucleus	34.19	39.48
CDY29082	Canola	nucleus	29.39	38.33
Bra012804.1-P	Field mustard	nucleus	29.39	38.17
CDX90602	Canola	nucleus	29.39	38.17
Bra006923.1-P	Field mustard	nucleus	29.39	38.02
CDX78095	Canola	nucleus	29.39	38.02
CDY59600	Canola	nucleus	28.75	36.89
AT3G52440.2	Thale cress	nucleus	30.03	35.34
GSMUA_Achr5P01010_001	Banana	nucleus	27.16	32.82
PGSC0003DMT400002060	Potato	nucleus	27.8	32.71
PGSC0003DMT400047705	Potato	nucleus	21.09	25.29
PGSC0003DMT400058729	Potato	nucleus	14.7	23.35
PGSC0003DMT400048612	Potato	nucleus	20.13	23.25
PGSC0003DMT400075051	Potato	nucleus	21.41	23.02
PGSC0003DMT400000349	Potato	nucleus	19.17	22.64
PGSC0003DMT400019416	Potato	nucleus	21.41	22.19
PGSC0003DMT400065271	Potato	nucleus	20.77	21.74
PGSC0003DMT400069680	Potato	nucleus	19.17	21.43
PGSC0003DMT400076397	Potato	nucleus	18.85	20.7
PGSC0003DMT400025984	Potato	nucleus	17.57	19.64
PGSC0003DMT400033382	Potato	nucleus	15.97	19.38
PGSC0003DMT400078164	Potato	nucleus	19.81	19.38
PGSC0003DMT400031928	Potato	nucleus	20.45	19.28
PGSC0003DMT400060216	Potato	nucleus	18.53	19.21
PGSC0003DMT400046598	Potato	nucleus	19.81	18.79
PGSC0003DMT400001174	Potato	nucleus	15.34	18.75
PGSC0003DMT400010397	Potato	nucleus	18.53	18.18
PGSC0003DMT400041580	Potato	nucleus	21.09	17.46
PGSC0003DMT400057782	Potato	mitochondrion	15.34	17.02
PGSC0003DMT400049288	Potato	nucleus	19.81	16.58
PGSC0003DMT400076447	Potato	nucleus	18.53	14.57
PGSC0003DMT400023033	Potato	nucleus	18.53	14.39

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1BXA0	PFAM:PD007478
PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400021361	PGSC:PGSC0003DMG400021361	EnsemblPlants:PGSC0003DMT400055052	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF73	UniParc:UPI000296E1C0	InterPro:Znf_Dof	SEG:seg	:

Description

Dof zinc finger protein DOF3.5 [Source:PGSC_GENE;Acc:PGSC0003DMG400021361]

Coordinates

chr1:+:2875111..2876052

Molecular Weight (calculated)

35183.8 Da

IEP (calculated)

6.215

GRAVY (calculated)

-0.725

Length

313 amino acids

Sequence
(BLAST)

001: MEREIWKSNV ELVPTCPRCG STNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPIG GGCRKSRRGK SSSSIIHQHG LISRNLGHGV CLNHTNIDHN
101: QSNSTNSLDH HGPTIDLALV YSNFLNSDNS KPSQLENHQN LELSDNLLLP NQEGVLVAPS FEFSTMIDME FMTSNLGQES RLIGDGVYFS GIHDEKHNIM
201: NHSDVHDDHY TNMNNVNGNN IINHDQLGNN YMELPPLPCE EMMWSNNSHG HHDMVFPNDI LSTSHNLSAG GPESEPELEP KLAIEDPSHD HNANIANDGS
301: HFNLSNFGNI FRP

Best Arabidopsis Sequence Match ( AT3G52440.2 )
(BLAST)

001: MHAYIIHSYS DRLKKSERDM ERAEALTSSF IWRPNANANA EITPSCPRCG SSNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG GGCRKSRRPK
101: SSSGNNTKTS LTANSGNPGG GSPSIDLALV YANFLNPKPD ESILQENCDL ATTDFLVDNP TGTSMDPSWS MDINDGHHDH YINPVEHIVE ECGYNGLPPF
201: PGEELLSLDT NGVWSDALLI GHNHVDVGVT PVQAVHEPVV HFADESNDST NLLFGSWSPF DFTADG

Arabidopsis Description

Dof-type zinc finger DNA-binding family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.