Factsheet for PGSC0003DMT400048612

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009360.2.1	Tomato	nucleus	88.19	91.57
PGSC0003DMT400000349	Potato	nucleus	56.46	57.74
GSMUA_Achr4P30470_001	Banana	nucleus	26.2	44.1
PGSC0003DMT400047705	Potato	nucleus	41.7	43.3
VIT_15s0046g00150.t01	Wine grape	nucleus	49.82	42.72
PGSC0003DMT400031928	Potato	nucleus	46.86	38.25
GSMUA_Achr11P...	Banana	nucleus	40.96	37.76
GSMUA_Achr1P03930_001	Banana	nucleus	26.2	27.63
PGSC0003DMT400069680	Potato	nucleus	27.68	26.79
PGSC0003DMT400065271	Potato	nucleus	29.15	26.42
PGSC0003DMT400019416	Potato	nucleus	28.04	25.17
PGSC0003DMT400033382	Potato	nucleus	23.62	24.81
PGSC0003DMT400058729	Potato	nucleus	17.71	24.37
PGSC0003DMT400076397	Potato	nucleus	23.62	22.46
PGSC0003DMT400046598	Potato	nucleus	27.31	22.42
PGSC0003DMT400002060	Potato	nucleus	20.66	21.05
PGSC0003DMT400010397	Potato	nucleus	24.72	21.0
PGSC0003DMT400075051	Potato	nucleus	22.51	20.96
PGSC0003DMT400060216	Potato	nucleus	22.51	20.2
PGSC0003DMT400055052	Potato	nucleus	23.25	20.13
PGSC0003DMT400057782	Potato	mitochondrion	20.66	19.86
PGSC0003DMT400025984	Potato	nucleus	20.3	19.64
PGSC0003DMT400078164	Potato	nucleus	22.88	19.38
PGSC0003DMT400001174	Potato	nucleus	18.08	19.14
PGSC0003DMT400076447	Potato	nucleus	28.04	19.1
PGSC0003DMT400041580	Potato	nucleus	24.72	17.72
PGSC0003DMT400049288	Potato	nucleus	22.51	16.31
PGSC0003DMT400023033	Potato	nucleus	23.25	15.63

Protein Annotations

EntrezGene:102599884	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1BMN5
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400018886	PGSC:PGSC0003DMG400018886	EnsemblPlants:PGSC0003DMT400048612	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF15	UniParc:UPI0002968940	RefSeq:XP_006362132.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018886]

Coordinates

chr10:-:5210107..5212001

Molecular Weight (calculated)

29793.7 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.656

Length

271 amino acids

Sequence
(BLAST)

001: MDTTTQWTQD IGLVTSNMAT QIAPPNVTCS RTSSTMEKKV RPQKDQVVNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR YWTEGGTLRN VPVGGGSRKN
101: SRCSILSSSS QKLLDLNPNP SLSSLQNPNY NLNLGSNQDL NLGFPSINIH DHNNYFRGMP QFLEFPKMDK GNNGIDHFST STSNTTPVSA LDLLRTGIAS
201: RGLSAFISSS SPATPDLNAL YTSSEVQENG AKMMFPFGCL NNHNNSESKG QENSSSVGYW NDGMLGGGGT W

Best Arabidopsis Sequence Match ( AT3G61850.4 )
(BLAST)

001: MDATKWTQGF QEMINVKPME QMISSTNNNT PQQQPTFIAT NTRPNATASN GGSGGNTNNT ATMETRKARP QEKVNCPRCN STNTKFCYYN NYSLTQPRYF
101: CKGCRRYWTE GGSLRNVPVG GSSRKNKRSS TPLASPSNPK LPDLNPPILF SSQIPNKSNK DLNLLSFPVM QDHHHHGMSH FFHMPKIENN NTSSSIYASS
201: SPVSALELLR SNGVSSRGMN TFLPGQMMDS NSVLYSSLGF PTMPDYKQSN NNLSFSIDHH QGIGHNTINS NQRAQDNNDD MNGASRVLFP FSDMKELSST
301: TQEKSHGNNT YWNGMFSNTG GSSW

Arabidopsis Description

DAG1Dof-type zinc finger DNA-binding family protein [Source:UniProtKB/TrEMBL;Acc:B3H6D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.