Factsheet for PGSC0003DMT400031928

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082910.1.1	Tomato	nucleus	87.65	91.51
VIT_16s0098g01420.t01	Wine grape	nucleus	49.7	57.49
KRH64383	Soybean	nucleus	47.59	53.2
KRH53547	Soybean	nucleus	32.23	51.94
PGSC0003DMT400000349	Potato	nucleus	38.55	48.3
PGSC0003DMT400048612	Potato	nucleus	38.25	46.86
PGSC0003DMT400047705	Potato	nucleus	35.84	45.59
GSMUA_Achr5P15160_001	Banana	nucleus	32.53	36.99
CDY51722	Canola	nucleus	30.72	36.69
CDY07156	Canola	nucleus	30.42	36.2
AT4G00940.2	Thale cress	nucleus	31.93	36.05
Bra037401.1-P	Field mustard	nucleus	31.33	34.9
PGSC0003DMT400069680	Potato	nucleus	24.7	29.29
PGSC0003DMT400019416	Potato	nucleus	24.4	26.82
PGSC0003DMT400065271	Potato	nucleus	23.8	26.42
PGSC0003DMT400033382	Potato	nucleus	20.48	26.36
PGSC0003DMT400058729	Potato	nucleus	15.06	25.38
PGSC0003DMT400046598	Potato	nucleus	25.0	25.15
PGSC0003DMT400002060	Potato	nucleus	18.67	23.31
PGSC0003DMT400060216	Potato	nucleus	20.78	22.85
PGSC0003DMT400076397	Potato	nucleus	19.58	22.81
PGSC0003DMT400078164	Potato	nucleus	21.69	22.5
PGSC0003DMT400075051	Potato	nucleus	18.67	21.31
PGSC0003DMT400001174	Potato	nucleus	16.27	21.09
PGSC0003DMT400025984	Potato	nucleus	17.77	21.07
PGSC0003DMT400010397	Potato	nucleus	19.88	20.69
PGSC0003DMT400055052	Potato	nucleus	19.28	20.45
PGSC0003DMT400057782	Potato	mitochondrion	16.57	19.5
PGSC0003DMT400076447	Potato	nucleus	23.19	19.35
PGSC0003DMT400041580	Potato	nucleus	21.99	19.31
PGSC0003DMT400049288	Potato	nucleus	21.39	18.98
PGSC0003DMT400023033	Potato	nucleus	20.48	16.87

Protein Annotations

EntrezGene:102578853	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1AWI3
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400012249	PGSC:PGSC0003DMG400012249	EnsemblPlants:PGSC0003DMT400031928	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF15	UniParc:UPI00029591D6	RefSeq:XP_006344006.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zn finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012249]

Coordinates

chr8:+:56490010..56492664

Molecular Weight (calculated)

36487.1 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.851

Length

332 amino acids

Sequence
(BLAST)

001: MDTAQWPQEI LVKPMEDIIG NTNGSSKPNC VERKLVRPQK DQVVNCPRCN STNTKFCYYN NYSLSQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKKSS
101: SPYNSNNNHV IVNNKKLPDN LVAPPPQRDN IEEYPERHFG NRPDTSIPQH HHAQNPSKIV HEGSQDLNLG FSSDFKTITE LIQVPNYDGS NKDNNSPNIS
201: TLPPPPPSSS SSASSPSQLS AMELINGITS RGLNSNSFMT MPNSVYNSSG FSLMPSLNFS LDHGLGNNVH HSSYGNNNNL QETNANGRFL FPFVGLKQVS
301: NNTSDGANEP SLGDQSTNGY WNGMLGGGGG SW

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.