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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g071480.2.1 Tomato nucleus 95.0 95.34
VIT_17s0000g08290.t01 Wine grape nucleus 61.43 55.84
PGSC0003DMT400046598 Potato nucleus 62.5 53.03
KRH63537 Soybean nucleus 60.0 48.84
KRH54395 Soybean nucleus 59.64 47.31
KRH03289 Soybean nucleus 54.29 46.06
KRH57071 Soybean nucleus 53.21 45.15
GSMUA_Achr10P... Banana nucleus 37.86 41.09
AT5G62940.1 Thale cress nucleus 53.93 40.59
CDY00341 Canola nucleus 52.86 40.22
CDX87270 Canola nucleus 48.93 40.18
Bra035873.1-P Field mustard nucleus 48.57 40.0
CDY16754 Canola nucleus 48.57 40.0
CDX84369 Canola nucleus 52.5 39.62
Bra010136.1-P Field mustard nucleus 51.43 39.13
GSMUA_Achr2P23020_001 Banana nucleus 36.79 37.45
Zm00001d017788_P001 Maize nucleus 36.43 35.42
Zm00001d051577_P001 Maize nucleus 37.5 35.35
EES05649 Sorghum nucleus 37.14 35.25
Os02t0707200-00 Rice nucleus 35.0 34.03
TraesCS6D01G254200.1 Wheat nucleus 37.14 33.99
TraesCS6A01G274000.1 Wheat nucleus 37.14 33.99
TraesCS6B01G301500.1 Wheat nucleus 36.79 33.66
PGSC0003DMT400047705 Potato nucleus 27.14 29.12
PGSC0003DMT400048612 Potato nucleus 26.79 27.68
PGSC0003DMT400019416 Potato nucleus 28.57 26.49
GSMUA_Achr1P20550_001 Banana nucleus 25.0 25.93
PGSC0003DMT400000349 Potato nucleus 23.93 25.28
PGSC0003DMT400002060 Potato nucleus 23.57 24.81
PGSC0003DMT400031928 Potato nucleus 29.29 24.7
PGSC0003DMT400065271 Potato nucleus 25.71 24.08
PGSC0003DMT400058729 Potato nucleus 16.43 23.35
PGSC0003DMT400033382 Potato nucleus 21.07 22.87
PGSC0003DMT400010397 Potato nucleus 25.0 21.94
PGSC0003DMT400060216 Potato nucleus 23.21 21.52
PGSC0003DMT400076397 Potato nucleus 21.43 21.05
PGSC0003DMT400025984 Potato nucleus 20.71 20.71
PGSC0003DMT400075051 Potato nucleus 21.07 20.27
PGSC0003DMT400049288 Potato nucleus 26.43 19.79
PGSC0003DMT400001174 Potato nucleus 17.86 19.53
PGSC0003DMT400055052 Potato nucleus 21.43 19.17
PGSC0003DMT400057782 Potato mitochondrion 18.93 18.79
PGSC0003DMT400078164 Potato nucleus 21.07 18.44
PGSC0003DMT400041580 Potato nucleus 22.5 16.67
PGSC0003DMT400076447 Potato nucleus 22.86 16.08
PGSC0003DMT400023033 Potato nucleus 22.86 15.88
Protein Annotations
EntrezGene:102593793MapMan:15.5.1.5GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR003851UniProt:M1CKX0
PFAM:PD007478PFAM:PF02701EnsemblPlantsGene:PGSC0003DMG400027089PGSC:PGSC0003DMG400027089EnsemblPlants:PGSC0003DMT400069680ScanProsite:PS01361
PFscan:PS50884PANTHER:PTHR31992PANTHER:PTHR31992:SF80UniParc:UPI0002966E21RefSeq:XP_006347454.1InterPro:Znf_Dof
SEG:seg:::::
Description
DOF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027089]
Coordinates
chr6:+:52336771..52338763
Molecular Weight (calculated)
31234.5 Da
IEP (calculated)
7.497
GRAVY (calculated)
-0.708
Length
280 amino acids
Sequence
(BLAST)
001: MGITSLQVCM DSSNWLQDTI PEENEFDSSS SPSGGDIFTC SRPLMERKLR PQHDKPINCP RCDSTHTKFC YYNNYSLSQP RYFCKSCRRY WTKGGTLRNI
101: PVGGGCRKNK KVSSKNSKLS NDNITPHVES SHNYPEMSFS HFGNFMENNN MNHNFMHHAP IDFMDSKYQA FVGTTSTRNQ DFLGNVNVGT GLINGYGEMD
201: NSGIGPHYNG GFCSSAFGMP NMNGNIINYE GQNITMDVKP NPKILSLEWH DQGYLNGGLG TWSGLMNNGY GSTATTNSLV
Best Arabidopsis Sequence Match ( AT5G62940.1 )
(BLAST)
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.