Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54395 | Soybean | nucleus | 74.68 | 65.16 |
| PGSC0003DMT400069680 | Potato | nucleus | 55.84 | 61.43 |
| KRH57071 | Soybean | nucleus | 64.94 | 60.61 |
| KRH03289 | Soybean | nucleus | 64.94 | 60.61 |
| Solyc06g071480.2.1 | Tomato | nucleus | 54.87 | 60.57 |
| GSMUA_Achr10P... | Banana | nucleus | 43.83 | 52.33 |
| CDY00341 | Canola | nucleus | 54.55 | 45.65 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 40.58 | 45.45 |
| CDX84369 | Canola | nucleus | 54.22 | 45.01 |
| AT5G62940.1 | Thale cress | nucleus | 54.22 | 44.89 |
| Bra010136.1-P | Field mustard | nucleus | 53.25 | 44.57 |
| CDX87270 | Canola | nucleus | 48.7 | 43.99 |
| CDY16754 | Canola | nucleus | 48.05 | 43.53 |
| Bra035873.1-P | Field mustard | nucleus | 48.05 | 43.53 |
| Zm00001d017788_P001 | Maize | nucleus | 38.96 | 41.67 |
| EES05649 | Sorghum | nucleus | 38.96 | 40.68 |
| Zm00001d051577_P001 | Maize | nucleus | 38.64 | 40.07 |
| Os02t0707200-00 | Rice | nucleus | 37.01 | 39.58 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 36.36 | 38.89 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 37.99 | 38.24 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 37.99 | 38.24 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 37.66 | 37.91 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 33.77 | 36.24 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 33.12 | 32.28 |
| VIT_06s0004g03420.t01 | Wine grape | nucleus | 27.6 | 28.72 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 25.0 | 28.52 |
| VIT_10s0003g00030.t01 | Wine grape | nucleus | 23.38 | 24.08 |
| VIT_08s0105g00170.t01 | Wine grape | nucleus | 20.45 | 23.33 |
| VIT_18s0001g15730.t01 | Wine grape | nucleus | 20.78 | 22.78 |
| VIT_17s0000g04850.t01 | Wine grape | nucleus | 23.38 | 22.64 |
| VIT_08s0007g00180.t01 | Wine grape | nucleus | 25.32 | 22.61 |
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 24.68 | 22.55 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 23.05 | 22.19 |
| VIT_10s0003g00040.t01 | Wine grape | nucleus | 22.08 | 22.08 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 20.45 | 21.36 |
| VIT_00s0253g00060.t01 | Wine grape | nucleus | 23.38 | 20.45 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 21.75 | 19.82 |
Protein Annotations
| EntrezGene:100265549 | wikigene:100265549 | MapMan:15.5.1.5 | EMBL:AM423336 | ProteinID:CAN73290 | ProteinID:CAN73290.1 |
| ProteinID:CCB42984 | ProteinID:CCB42984.1 | UniProt:F6GSR1 | EMBL:FN594950 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010067 | GO:GO:0010087 |
| GO:GO:0045893 | InterPro:IPR003851 | EntrezGene:LOC100265549 | wikigene:LOC100265549 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | TIGR:TC65013 | UniParc:UPI00015C8F16 |
| ArrayExpress:VIT_17s0000g08290 | EnsemblPlantsGene:VIT_17s0000g08290 | EnsemblPlants:VIT_17s0000g08290.t01 | unigene:Vvi.12663 | RefSeq:XP_002279622 | RefSeq:XP_002279622.1 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr17:-:9361008..9362865
Molecular Weight (calculated)
33873.9 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.602
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTFLPVCM DSSEWLQGTA HEENGMDSSS PSGDMLTCSR PLIERRLRPQ HDQALKCPRC DSTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV
101: GGGCRKNKKV ASKKSNDHSI NQNPGPSSHN PTDLHLSFPE VQFSHLSNLL GSHGGLGNHS FMESKYNGML ENARPIDFME GKFEAIVGSS RNHDFMGNCE
201: LGMGGLGDMS HGGLAPNFHG LCSPFGVTLD GNGGNFMDTC QRLMLPYEGN VEQNAMDVKP NTKLLSLDWQ DQGCSDAGKD SFVYLNSLGS WNGMMSNGYG
301: PSTTNPLV
101: GGGCRKNKKV ASKKSNDHSI NQNPGPSSHN PTDLHLSFPE VQFSHLSNLL GSHGGLGNHS FMESKYNGML ENARPIDFME GKFEAIVGSS RNHDFMGNCE
201: LGMGGLGDMS HGGLAPNFHG LCSPFGVTLD GNGGNFMDTC QRLMLPYEGN VEQNAMDVKP NTKLLSLDWQ DQGCSDAGKD SFVYLNSLGS WNGMMSNGYG
301: PSTTNPLV
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.