Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16754 | Canola | nucleus | 97.36 | 97.65 |
| CDY00341 | Canola | nucleus | 88.27 | 81.79 |
| CDX84369 | Canola | nucleus | 88.27 | 81.13 |
| AT5G62940.1 | Thale cress | nucleus | 87.39 | 80.11 |
| CDY70840 | Canola | nucleus | 17.89 | 53.98 |
| Solyc06g071480.2.1 | Tomato | nucleus | 40.18 | 49.1 |
| PGSC0003DMT400069680 | Potato | nucleus | 40.18 | 48.93 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 43.99 | 48.7 |
| KRH63537 | Soybean | nucleus | 46.04 | 45.64 |
| GSMUA_Achr10P... | Banana | nucleus | 31.67 | 41.86 |
| Zm00001d017788_P001 | Maize | nucleus | 33.72 | 39.93 |
| EES05649 | Sorghum | nucleus | 33.72 | 38.98 |
| Zm00001d051577_P001 | Maize | nucleus | 33.14 | 38.05 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 29.91 | 37.09 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 31.38 | 34.97 |
| Os02t0707200-00 | Rice | nucleus | 29.33 | 34.72 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 31.09 | 34.64 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 31.09 | 34.64 |
| CDY07781 | Canola | nucleus | 19.06 | 30.37 |
| CDY53379 | Canola | nucleus | 18.48 | 28.77 |
| CDY31568 | Canola | nucleus | 20.53 | 27.13 |
| CDY51722 | Canola | nucleus | 21.99 | 26.98 |
| CDY07156 | Canola | nucleus | 21.99 | 26.88 |
| CDX80191 | Canola | nucleus | 20.23 | 26.85 |
| CDY09221 | Canola | nucleus | 20.23 | 26.74 |
| CDX71704 | Canola | nucleus | 26.1 | 26.57 |
| CDX71050 | Canola | nucleus | 19.35 | 26.09 |
| CDX86775 | Canola | nucleus | 23.75 | 26.05 |
| CDY08775 | Canola | nucleus | 14.96 | 26.02 |
| CDY64622 | Canola | nucleus | 24.63 | 26.01 |
| CDY57876 | Canola | nucleus | 26.98 | 25.48 |
| CDY41539 | Canola | nucleus | 27.27 | 25.41 |
| CDX80030 | Canola | nucleus | 26.98 | 25.27 |
| CDX79743 | Canola | nucleus | 21.7 | 25.26 |
| CDX87189 | Canola | nucleus | 18.48 | 25.2 |
| CDY03494 | Canola | nucleus | 25.22 | 25.0 |
| CDY72657 | Canola | nucleus | 21.41 | 25.0 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 19.65 | 24.81 |
| CDY71684 | Canola | nucleus | 24.34 | 24.78 |
| CDX77184 | Canola | nucleus | 18.48 | 24.61 |
| CDY35454 | Canola | nucleus | 24.63 | 24.56 |
| CDY71763 | Canola | nucleus | 24.63 | 24.49 |
| CDX92613 | Canola | nucleus | 24.63 | 24.49 |
| CDX90602 | Canola | nucleus | 17.3 | 24.48 |
| CDX89134 | Canola | extracellular, vacuole | 24.93 | 24.43 |
| CDY08392 | Canola | nucleus | 24.05 | 24.26 |
| CDY29082 | Canola | nucleus | 17.01 | 24.17 |
| CDX74947 | Canola | nucleus | 22.87 | 24.0 |
| CDX91370 | Canola | nucleus | 22.87 | 24.0 |
| CDY16836 | Canola | nucleus | 18.77 | 23.97 |
| CDY65260 | Canola | nucleus | 21.7 | 23.95 |
| CDX95706 | Canola | nucleus | 25.81 | 23.85 |
| CDX88742 | Canola | nucleus | 19.35 | 23.83 |
| CDY61727 | Canola | nucleus | 26.1 | 23.8 |
| CDX83357 | Canola | nucleus | 26.1 | 23.8 |
| CDX93365 | Canola | nucleus | 21.41 | 23.62 |
| CDY04620 | Canola | nucleus | 17.6 | 23.62 |
| CDY00373 | Canola | nucleus | 17.89 | 23.46 |
| CDY61064 | Canola | nucleus | 17.89 | 23.37 |
| CDY27314 | Canola | nucleus | 24.63 | 23.33 |
| CDY40813 | Canola | nucleus | 19.35 | 23.32 |
| CDY50231 | Canola | nucleus | 17.3 | 23.32 |
| CDX73385 | Canola | nucleus | 20.23 | 22.85 |
| CDX78095 | Canola | nucleus | 16.13 | 22.73 |
| CDY59600 | Canola | nucleus | 16.13 | 22.54 |
| CDY02191 | Canola | nucleus | 19.35 | 22.45 |
| CDY42836 | Canola | nucleus | 18.77 | 22.38 |
| CDY69145 | Canola | nucleus, plastid | 19.94 | 21.59 |
| CDY70312 | Canola | nucleus | 17.3 | 20.77 |
| CDY15624 | Canola | nucleus | 20.23 | 20.66 |
| CDY33948 | Canola | nucleus | 17.89 | 20.2 |
| CDY37834 | Canola | nucleus | 17.89 | 20.07 |
| CDY70666 | Canola | nucleus | 17.3 | 19.87 |
| CDY72049 | Canola | nucleus | 17.3 | 19.87 |
| CDX77212 | Canola | nucleus | 19.65 | 19.71 |
| CDX95139 | Canola | nucleus | 19.35 | 19.64 |
| CDY70838 | Canola | nucleus | 17.6 | 19.61 |
| CDY31735 | Canola | nucleus | 19.65 | 19.48 |
| CDY40213 | Canola | nucleus | 20.23 | 19.44 |
| CDX76102 | Canola | nucleus | 21.41 | 19.16 |
| CDX81292 | Canola | nucleus | 15.84 | 19.15 |
| CDY35729 | Canola | nucleus | 16.72 | 19.06 |
| CDX90142 | Canola | nucleus | 17.3 | 18.67 |
| CDY40358 | Canola | nucleus | 18.18 | 18.62 |
| CDY24798 | Canola | nucleus | 24.63 | 18.54 |
| CDY66590 | Canola | nucleus | 16.72 | 17.43 |
| CDY15678 | Canola | nucleus | 16.72 | 17.43 |
| CDY70704 | Canola | nucleus | 18.48 | 17.26 |
| CDY61965 | Canola | nucleus | 15.54 | 17.04 |
| CDY06274 | Canola | nucleus | 15.25 | 16.56 |
| CDY55549 | Canola | nucleus | 19.06 | 16.17 |
| CDY04855 | Canola | nucleus | 19.06 | 16.01 |
| CDX80822 | Canola | nucleus | 19.06 | 16.01 |
| CDY55422 | Canola | nucleus | 18.77 | 15.96 |
| CDY08776 | Canola | nucleus | 2.35 | 9.3 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078DDH1 | EnsemblPlants:CDX87270 | ProteinID:CDX87270 | ProteinID:CDX87270.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00146222001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | UniParc:UPI0004EE9EE3 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
BnaC09g05850D
Coordinates
chrLK031849:-:1662069..1663890
Molecular Weight (calculated)
36802.9 Da
IEP (calculated)
7.998
GRAVY (calculated)
-0.660
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTSLQACM DSDWLQEAES SGGSMLDSTT TSPSAADILA ACSTRPQASA MAVAATAMMD SGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSPSSKKPS NIVTTDLMAL AHSHQNYQNA SLGFPHFGGN GMMGSYTAPD HSNVGYLESK YGGLLSQSPR
201: PIDFLDSKFD LMGVNNNNLV MVDHGSNGDH HHNLHNNVGG GGLMDISTCQ RLMLSNYDHH LYNHHEDNQR ITSIMDVKPS PKLLSLDWQQ EQGYSEGSGN
301: GGGGRSDGGG YGGGVYINGL GSSWNGLMNG YGSSTKTNSL V
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSPSSKKPS NIVTTDLMAL AHSHQNYQNA SLGFPHFGGN GMMGSYTAPD HSNVGYLESK YGGLLSQSPR
201: PIDFLDSKFD LMGVNNNNLV MVDHGSNGDH HHNLHNNVGG GGLMDISTCQ RLMLSNYDHH LYNHHEDNQR ITSIMDVKPS PKLLSLDWQQ EQGYSEGSGN
301: GGGGRSDGGG YGGGVYINGL GSSWNGLMNG YGSSTKTNSL V
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.