Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014752.1-P | Field mustard | nucleus | 97.78 | 88.0 |
| CDX76102 | Canola | nucleus | 97.46 | 80.58 |
| CDX73385 | Canola | nucleus | 72.38 | 75.5 |
| CDY40213 | Canola | nucleus | 77.14 | 68.45 |
| AT3G55370.3 | Thale cress | nucleus | 74.6 | 63.86 |
| CDY70840 | Canola | nucleus | 17.46 | 48.67 |
| CDY07781 | Canola | nucleus | 27.3 | 40.19 |
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 42.86 | 40.06 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 28.89 | 36.84 |
| CDX93365 | Canola | nucleus | 33.97 | 34.63 |
| CDX74947 | Canola | nucleus | 35.56 | 34.46 |
| CDY65260 | Canola | nucleus | 33.65 | 34.3 |
| CDX91370 | Canola | nucleus | 35.24 | 34.15 |
| CDX79743 | Canola | nucleus | 31.43 | 33.79 |
| CDY40358 | Canola | nucleus | 34.29 | 32.43 |
| CDY70704 | Canola | nucleus | 37.14 | 32.05 |
| CDY15624 | Canola | nucleus | 33.65 | 31.74 |
| CDY55422 | Canola | nucleus | 40.32 | 31.67 |
| CDY04855 | Canola | nucleus | 40.63 | 31.53 |
| CDY55549 | Canola | nucleus | 39.37 | 30.85 |
| CDX95139 | Canola | nucleus | 32.7 | 30.65 |
| CDX80822 | Canola | nucleus | 39.05 | 30.3 |
| CDX77212 | Canola | nucleus | 32.06 | 29.71 |
| CDY31735 | Canola | nucleus | 32.38 | 29.65 |
| CDY61965 | Canola | nucleus | 29.21 | 29.58 |
| CDY06274 | Canola | nucleus | 29.21 | 29.3 |
| CDY08775 | Canola | nucleus | 17.46 | 28.06 |
| CDX87189 | Canola | nucleus | 21.27 | 26.8 |
| CDY16836 | Canola | nucleus | 22.22 | 26.22 |
| CDY53379 | Canola | nucleus | 17.78 | 25.57 |
| CDY70312 | Canola | nucleus | 22.86 | 25.35 |
| CDY70666 | Canola | nucleus | 23.81 | 25.25 |
| CDY72049 | Canola | nucleus | 23.81 | 25.25 |
| CDY40813 | Canola | nucleus | 22.22 | 24.73 |
| CDY29082 | Canola | nucleus | 18.73 | 24.58 |
| CDX80191 | Canola | nucleus | 20.0 | 24.51 |
| CDY42836 | Canola | nucleus | 22.22 | 24.48 |
| CDY31568 | Canola | nucleus | 20.0 | 24.42 |
| CDY72657 | Canola | nucleus | 22.54 | 24.32 |
| CDX90602 | Canola | nucleus | 18.41 | 24.07 |
| CDX78095 | Canola | nucleus | 18.41 | 23.97 |
| CDX71050 | Canola | nucleus | 19.05 | 23.72 |
| CDY09221 | Canola | nucleus | 19.37 | 23.64 |
| CDY66590 | Canola | nucleus | 24.44 | 23.55 |
| CDX80030 | Canola | nucleus | 26.67 | 23.08 |
| CDX81292 | Canola | nucleus | 20.63 | 23.05 |
| CDY51722 | Canola | nucleus | 20.32 | 23.02 |
| CDY59600 | Canola | nucleus | 17.78 | 22.95 |
| CDY15678 | Canola | nucleus | 23.81 | 22.94 |
| CDY02191 | Canola | nucleus | 21.27 | 22.79 |
| CDY35729 | Canola | nucleus | 21.59 | 22.74 |
| CDY71684 | Canola | nucleus | 24.13 | 22.69 |
| CDY41539 | Canola | nucleus | 26.35 | 22.68 |
| CDY03494 | Canola | nucleus | 24.76 | 22.67 |
| CDX77184 | Canola | nucleus | 18.41 | 22.66 |
| CDY07156 | Canola | nucleus | 20.0 | 22.58 |
| CDY33948 | Canola | nucleus | 21.59 | 22.52 |
| CDY71763 | Canola | nucleus | 24.44 | 22.45 |
| CDX92613 | Canola | nucleus | 24.44 | 22.45 |
| CDX88742 | Canola | nucleus | 19.68 | 22.38 |
| CDY37834 | Canola | nucleus | 21.59 | 22.37 |
| CDY70838 | Canola | nucleus | 21.59 | 22.22 |
| CDX95706 | Canola | nucleus | 25.71 | 21.95 |
| CDX83357 | Canola | nucleus | 26.03 | 21.93 |
| CDX90142 | Canola | nucleus | 21.9 | 21.84 |
| CDY27314 | Canola | nucleus | 24.76 | 21.67 |
| CDX86775 | Canola | nucleus | 21.27 | 21.54 |
| CDX71704 | Canola | nucleus | 22.86 | 21.49 |
| CDY61727 | Canola | nucleus | 25.4 | 21.39 |
| CDY35454 | Canola | nucleus | 22.86 | 21.05 |
| CDY64622 | Canola | nucleus | 21.27 | 20.74 |
| CDY08392 | Canola | nucleus | 22.22 | 20.71 |
| CDY00373 | Canola | nucleus | 16.83 | 20.38 |
| CDY50231 | Canola | nucleus | 16.19 | 20.16 |
| CDY57876 | Canola | nucleus | 22.86 | 19.94 |
| CDX87270 | Canola | nucleus | 21.59 | 19.94 |
| CDY61064 | Canola | nucleus | 16.51 | 19.92 |
| CDY04620 | Canola | nucleus | 15.87 | 19.68 |
| CDX89134 | Canola | extracellular, vacuole | 21.59 | 19.54 |
| CDY16754 | Canola | nucleus | 20.95 | 19.41 |
| CDY00341 | Canola | nucleus | 20.0 | 17.12 |
| CDX84369 | Canola | nucleus | 20.0 | 16.98 |
| CDY24798 | Canola | nucleus | 23.17 | 16.11 |
| CDY08776 | Canola | nucleus | 2.54 | 9.3 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078JRU0 | UniProt:A0A078JRU0 | EnsemblPlants:CDY69145 | ProteinID:CDY69145 | ProteinID:CDY69145.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00083490001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | UniParc:UPI0004EE0609 | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng62100DBnaCnng62100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRU0]
Coordinates
chrLK038740:-:3062..4375
Molecular Weight (calculated)
34469.7 Da
IEP (calculated)
9.189
GRAVY (calculated)
-0.812
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQGNTQQQD RVTSYQNPNF NLPSPPASQA GSSQARVNSM VERARIAKIP LPEAALKCPR CDSTNTKFCY FNNYNLTQPR HFCKTCRRYW TRGGALRNVP
101: VGGGFRRNKR SKSNGGGRSK STVVVSADNN NTSSSLSCNP SYSNPTNFLS YGQAPGFTSN LPILPPFQSH GGYNSSNIGL DFSGIQMSGM SSSGGMLDPW
201: RMSSLQQSQQ FPFLSNTSEL DQSSNALYPL LDGNEGLRSK PFMDMEQPRN VKAEENDQDL DKDGNGVNNL SRNFLGNINI NPSGNDEYTS WGGNSSINSS
301: WTGFTSNNST GHLSF
101: VGGGFRRNKR SKSNGGGRSK STVVVSADNN NTSSSLSCNP SYSNPTNFLS YGQAPGFTSN LPILPPFQSH GGYNSSNIGL DFSGIQMSGM SSSGGMLDPW
201: RMSSLQQSQQ FPFLSNTSEL DQSSNALYPL LDGNEGLRSK PFMDMEQPRN VKAEENDQDL DKDGNGVNNL SRNFLGNINI NPSGNDEYTS WGGNSSINSS
301: WTGFTSNNST GHLSF
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.