Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70840 | Canola | nucleus | 31.07 | 92.92 |
| AT1G64620.1 | Thale cress | nucleus | 77.81 | 74.72 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 42.6 | 50.0 |
| CDY71684 | Canola | nucleus | 43.49 | 43.88 |
| CDY35454 | Canola | nucleus | 43.79 | 43.27 |
| CDY71763 | Canola | nucleus | 43.49 | 42.86 |
| CDX92613 | Canola | nucleus | 43.49 | 42.86 |
| CDY03494 | Canola | nucleus | 42.9 | 42.15 |
| CDY72657 | Canola | nucleus | 35.8 | 41.44 |
| CDX80030 | Canola | nucleus | 35.5 | 32.97 |
| CDX71704 | Canola | nucleus | 32.54 | 32.84 |
| CDX95706 | Canola | nucleus | 35.8 | 32.79 |
| CDY41539 | Canola | nucleus | 35.5 | 32.79 |
| CDY24798 | Canola | nucleus | 43.2 | 32.23 |
| CDX83357 | Canola | nucleus | 35.5 | 32.09 |
| CDY51722 | Canola | nucleus | 26.33 | 32.01 |
| CDY07156 | Canola | nucleus | 26.04 | 31.54 |
| CDY61727 | Canola | nucleus | 34.62 | 31.28 |
| CDY64622 | Canola | nucleus | 29.88 | 31.27 |
| CDX86775 | Canola | nucleus | 28.7 | 31.19 |
| CDY27314 | Canola | nucleus | 32.84 | 30.83 |
| CDY57876 | Canola | nucleus | 32.25 | 30.19 |
| CDX89134 | Canola | extracellular, vacuole | 30.18 | 29.31 |
| CDY07781 | Canola | nucleus | 17.75 | 28.04 |
| CDX80191 | Canola | nucleus | 20.71 | 27.24 |
| CDY09221 | Canola | nucleus | 20.71 | 27.13 |
| CDY08775 | Canola | nucleus | 15.68 | 27.04 |
| CDY53379 | Canola | nucleus | 17.46 | 26.94 |
| CDY04620 | Canola | nucleus | 20.12 | 26.77 |
| CDY31568 | Canola | nucleus | 20.41 | 26.74 |
| CDY29082 | Canola | nucleus | 18.93 | 26.67 |
| CDY50231 | Canola | nucleus | 19.82 | 26.48 |
| CDX87189 | Canola | nucleus | 19.53 | 26.4 |
| CDX90602 | Canola | nucleus | 18.64 | 26.14 |
| CDX78095 | Canola | nucleus | 18.34 | 25.62 |
| CDY00373 | Canola | nucleus | 19.53 | 25.38 |
| CDX71050 | Canola | nucleus | 18.93 | 25.3 |
| CDY61064 | Canola | nucleus | 19.53 | 25.29 |
| CDY59600 | Canola | nucleus | 17.46 | 24.18 |
| CDY16754 | Canola | nucleus | 24.26 | 24.12 |
| CDX87270 | Canola | nucleus | 24.26 | 24.05 |
| CDY00341 | Canola | nucleus | 26.04 | 23.91 |
| CDY16836 | Canola | nucleus | 18.64 | 23.6 |
| CDX79743 | Canola | nucleus | 20.41 | 23.55 |
| CDX88742 | Canola | nucleus | 19.23 | 23.47 |
| CDX84369 | Canola | nucleus | 25.74 | 23.45 |
| CDY02191 | Canola | nucleus | 20.12 | 23.13 |
| CDX77184 | Canola | nucleus | 17.46 | 23.05 |
| CDY65260 | Canola | nucleus | 21.01 | 22.98 |
| CDY40813 | Canola | nucleus | 19.23 | 22.97 |
| CDY42836 | Canola | nucleus | 18.93 | 22.38 |
| CDX93365 | Canola | nucleus | 20.41 | 22.33 |
| CDY69145 | Canola | nucleus, plastid | 20.71 | 22.22 |
| CDY72049 | Canola | nucleus | 19.53 | 22.22 |
| CDX73385 | Canola | nucleus | 19.53 | 21.85 |
| CDX74947 | Canola | nucleus | 21.01 | 21.85 |
| CDY70666 | Canola | nucleus | 18.93 | 21.55 |
| CDX91370 | Canola | nucleus | 20.41 | 21.23 |
| CDY35729 | Canola | nucleus | 18.64 | 21.07 |
| CDY37834 | Canola | nucleus | 18.93 | 21.05 |
| CDY70838 | Canola | nucleus | 18.93 | 20.91 |
| CDY33948 | Canola | nucleus | 18.64 | 20.86 |
| CDY70312 | Canola | nucleus | 17.16 | 20.42 |
| CDX90142 | Canola | nucleus | 18.93 | 20.25 |
| CDY66590 | Canola | nucleus | 18.93 | 19.57 |
| CDY40358 | Canola | nucleus | 19.23 | 19.52 |
| CDX81292 | Canola | nucleus | 15.98 | 19.15 |
| CDY15678 | Canola | nucleus | 18.34 | 18.96 |
| CDX76102 | Canola | nucleus | 21.3 | 18.9 |
| CDX77212 | Canola | nucleus | 18.93 | 18.82 |
| CDY31735 | Canola | nucleus | 18.93 | 18.6 |
| CDY15624 | Canola | nucleus | 18.34 | 18.56 |
| CDY40213 | Canola | nucleus | 19.23 | 18.31 |
| CDY70704 | Canola | nucleus | 19.53 | 18.08 |
| CDX95139 | Canola | nucleus | 17.75 | 17.86 |
| CDY55549 | Canola | nucleus | 20.41 | 17.16 |
| CDY55422 | Canola | nucleus | 20.12 | 16.96 |
| CDX80822 | Canola | nucleus | 20.12 | 16.75 |
| CDY04855 | Canola | nucleus | 20.12 | 16.75 |
| CDY06274 | Canola | nucleus | 15.09 | 16.24 |
| CDY61965 | Canola | nucleus | 14.79 | 16.08 |
| CDY08776 | Canola | nucleus | 2.07 | 8.14 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078F5M3 | UniProt:A0A078F5M3 | EnsemblPlants:CDY08392 | ProteinID:CDY08392 | ProteinID:CDY08392.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00000138001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF78 | UniParc:UPI0004EE2D65 | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g12040DBnaC09g12040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5M3]
Coordinates
chrLK031985:+:872386..873905
Molecular Weight (calculated)
36712.3 Da
IEP (calculated)
7.891
GRAVY (calculated)
-0.731
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIAKWPQKE FIVKPMNETC LKQPNPAAAP VEEKKARPEK YHALNCPRCN SLNTKFCYYN NYSLTQPRYF CKDCKRYWTQ GGSLRNIPIG GGVRKNKRSS
101: SSSSSNSNSA SSSKKTLSVN NKTPPPLQQL NLKTVENDHV AKACSHGFGN AHEAKDLNSA FSQGFEIGHH HHHHHQSIPE FLQVVPSSMK NHTFVSTSSA
201: LELLGISNSS TTSSNSSPAF VTYPNVHDSS VYTAASPGFG MSYPQFQEFM RPPLGFSLDG GDSLHLEEGS SGTDNGRPLL PFESLKLHVS SSSTNSGGGN
301: GNDHEREKEE GEADNSVGFW NGMLSAGDSA ASAGGPWQ
101: SSSSSNSNSA SSSKKTLSVN NKTPPPLQQL NLKTVENDHV AKACSHGFGN AHEAKDLNSA FSQGFEIGHH HHHHHQSIPE FLQVVPSSMK NHTFVSTSSA
201: LELLGISNSS TTSSNSSPAF VTYPNVHDSS VYTAASPGFG MSYPQFQEFM RPPLGFSLDG GDSLHLEEGS SGTDNGRPLL PFESLKLHVS SSSTNSGGGN
301: GNDHEREKEE GEADNSVGFW NGMLSAGDSA ASAGGPWQ
001: MDTAKWPQEF VVKPMNEIVT NTCLKQQSNP PSPATPVERK ARPEKDQALN CPRCNSLNTK FCYYNNYSLT QPRYFCKDCR RYWTAGGSLR NIPVGGGVRK
101: NKRSSSNSSS SSPSSSSSSK KPLFANNNTP TPPLPHLNPK IGEAAATKVQ DLTFSQGFGN AHEVKDLNLA FSQGFGIGHN HHSSIPEFLQ VVPSSSMKNN
201: PLVSTSSSLE LLGISSSSAS SNSRPAFMSY PNVHDSSVYT ASGFGLSYPQ FQEFMRPALG FSLDGGDPLR QEEGSSGTNN GRPLLPFESL LKLPVSSSST
301: NSGGNGNLKE NNDEHSDHEH EKEEGEADQS VGFWSGMLSA GASAAASGGS WQ
101: NKRSSSNSSS SSPSSSSSSK KPLFANNNTP TPPLPHLNPK IGEAAATKVQ DLTFSQGFGN AHEVKDLNLA FSQGFGIGHN HHSSIPEFLQ VVPSSSMKNN
201: PLVSTSSSLE LLGISSSSAS SNSRPAFMSY PNVHDSSVYT ASGFGLSYPQ FQEFMRPALG FSLDGGDPLR QEEGSSGTNN GRPLLPFESL LKLPVSSSST
301: NSGGNGNLKE NNDEHSDHEH EKEEGEADQS VGFWSGMLSA GASAAASGGS WQ
Arabidopsis Description
DOF1.8Dof zinc finger protein DOF1.8 [Source:UniProtKB/Swiss-Prot;Acc:Q84JQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.