Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010136.1-P | Field mustard | nucleus | 98.37 | 98.37 |
| CDX84369 | Canola | nucleus | 97.83 | 97.03 |
| CDY16754 | Canola | nucleus | 82.61 | 89.41 |
| CDX87270 | Canola | nucleus | 81.79 | 88.27 |
| AT5G62940.1 | Thale cress | nucleus | 86.68 | 85.75 |
| CDY70840 | Canola | nucleus | 17.12 | 55.75 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 45.65 | 54.55 |
| PGSC0003DMT400069680 | Potato | nucleus | 40.22 | 52.86 |
| Solyc06g071480.2.1 | Tomato | nucleus | 39.67 | 52.33 |
| KRH63537 | Soybean | nucleus | 45.38 | 48.55 |
| GSMUA_Achr10P... | Banana | nucleus | 29.62 | 42.25 |
| Zm00001d017788_P001 | Maize | nucleus | 30.98 | 39.58 |
| EES05649 | Sorghum | nucleus | 31.25 | 38.98 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 27.99 | 37.45 |
| Zm00001d051577_P001 | Maize | nucleus | 30.16 | 37.37 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 29.89 | 35.95 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 29.62 | 35.62 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 29.62 | 35.62 |
| Os02t0707200-00 | Rice | nucleus | 27.72 | 35.42 |
| CDY07781 | Canola | nucleus | 17.66 | 30.37 |
| CDY31568 | Canola | nucleus | 20.65 | 29.46 |
| CDY53379 | Canola | nucleus | 17.39 | 29.22 |
| CDX80191 | Canola | nucleus | 20.38 | 29.18 |
| CDY51722 | Canola | nucleus | 22.01 | 29.14 |
| CDY07156 | Canola | nucleus | 22.01 | 29.03 |
| CDY09221 | Canola | nucleus | 20.11 | 28.68 |
| CDX71704 | Canola | nucleus | 25.82 | 28.36 |
| CDX71050 | Canola | nucleus | 19.02 | 27.67 |
| CDX86775 | Canola | nucleus | 23.37 | 27.65 |
| CDY64622 | Canola | nucleus | 24.18 | 27.55 |
| CDY57876 | Canola | nucleus | 26.63 | 27.15 |
| CDY72657 | Canola | nucleus | 21.47 | 27.05 |
| CDY41539 | Canola | nucleus | 26.9 | 27.05 |
| CDX80030 | Canola | nucleus | 26.63 | 26.92 |
| CDX87189 | Canola | nucleus | 18.21 | 26.8 |
| CDY71684 | Canola | nucleus | 24.18 | 26.57 |
| CDY61727 | Canola | nucleus | 26.9 | 26.47 |
| CDY03494 | Canola | nucleus | 24.73 | 26.45 |
| CDY35454 | Canola | nucleus | 24.46 | 26.32 |
| CDY27314 | Canola | nucleus | 25.54 | 26.11 |
| CDY08392 | Canola | nucleus | 23.91 | 26.04 |
| CDY71763 | Canola | nucleus | 24.18 | 25.95 |
| CDX92613 | Canola | nucleus | 24.18 | 25.95 |
| CDX89134 | Canola | extracellular, vacuole | 24.46 | 25.86 |
| CDY16836 | Canola | nucleus | 18.75 | 25.84 |
| CDX88742 | Canola | nucleus | 19.29 | 25.63 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 18.75 | 25.56 |
| CDX77184 | Canola | nucleus | 17.66 | 25.39 |
| CDX95706 | Canola | nucleus | 25.27 | 25.2 |
| CDY02191 | Canola | nucleus | 20.11 | 25.17 |
| CDX83357 | Canola | nucleus | 25.54 | 25.13 |
| CDY40813 | Canola | nucleus | 19.29 | 25.09 |
| CDY08775 | Canola | nucleus | 13.32 | 25.0 |
| CDY42836 | Canola | nucleus | 19.29 | 24.83 |
| CDY29082 | Canola | nucleus | 16.03 | 24.58 |
| CDX79743 | Canola | nucleus | 19.57 | 24.57 |
| CDX90602 | Canola | nucleus | 16.03 | 24.48 |
| CDY65260 | Canola | nucleus | 20.11 | 23.95 |
| CDX93365 | Canola | nucleus | 19.84 | 23.62 |
| CDY04620 | Canola | nucleus | 16.3 | 23.62 |
| CDX91370 | Canola | nucleus | 20.65 | 23.38 |
| CDX74947 | Canola | nucleus | 20.65 | 23.38 |
| CDY50231 | Canola | nucleus | 16.03 | 23.32 |
| CDY00373 | Canola | nucleus | 16.3 | 23.08 |
| CDY61064 | Canola | nucleus | 16.3 | 22.99 |
| CDX73385 | Canola | nucleus | 18.75 | 22.85 |
| CDX78095 | Canola | nucleus | 14.95 | 22.73 |
| CDY59600 | Canola | nucleus | 14.95 | 22.54 |
| CDY72049 | Canola | nucleus | 16.58 | 20.54 |
| CDY70666 | Canola | nucleus | 16.58 | 20.54 |
| CDY35729 | Canola | nucleus | 16.58 | 20.4 |
| CDY15624 | Canola | nucleus | 18.48 | 20.36 |
| CDY24798 | Canola | nucleus | 24.73 | 20.09 |
| CDY69145 | Canola | nucleus, plastid | 17.12 | 20.0 |
| CDX90142 | Canola | nucleus | 17.12 | 19.94 |
| CDY40358 | Canola | nucleus | 17.93 | 19.82 |
| CDY70312 | Canola | nucleus | 15.22 | 19.72 |
| CDY70838 | Canola | nucleus | 16.3 | 19.61 |
| CDY33948 | Canola | nucleus | 16.03 | 19.54 |
| CDX77212 | Canola | nucleus | 17.93 | 19.41 |
| CDY37834 | Canola | nucleus | 16.03 | 19.41 |
| CDX95139 | Canola | nucleus | 17.66 | 19.35 |
| CDY31735 | Canola | nucleus | 17.93 | 19.19 |
| CDY40213 | Canola | nucleus | 18.48 | 19.15 |
| CDX76102 | Canola | nucleus | 19.57 | 18.9 |
| CDX81292 | Canola | nucleus | 14.4 | 18.79 |
| CDY15678 | Canola | nucleus | 16.58 | 18.65 |
| CDY66590 | Canola | nucleus | 16.58 | 18.65 |
| CDY70704 | Canola | nucleus | 18.21 | 18.36 |
| CDY55549 | Canola | nucleus | 17.93 | 16.42 |
| CDY61965 | Canola | nucleus | 13.86 | 16.4 |
| CDY04855 | Canola | nucleus | 17.93 | 16.26 |
| CDX80822 | Canola | nucleus | 17.93 | 16.26 |
| CDY55422 | Canola | nucleus | 17.66 | 16.21 |
| CDY06274 | Canola | nucleus | 13.59 | 15.92 |
| CDY08776 | Canola | nucleus | 2.45 | 10.47 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078EGU0 | EnsemblPlants:CDY00341 | ProteinID:CDY00341 | ProteinID:CDY00341.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00109930001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | UniParc:UPI0004EF2F07 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
BnaA06g22420D
Coordinates
chrLK031917:-:1153855..1155361
Molecular Weight (calculated)
39370.8 Da
IEP (calculated)
7.976
GRAVY (calculated)
-0.600
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTSLQVCM DSDWLQEAES SGGSMLDSTS TSPSAADILA ACSTRPQASA MAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSHIVTTN TSDLMALAHS HQNYQNDSLG FSHFGANGMM GSSTALGHSN VGFLESKYGG
201: LLSPIPRPID FLDSKFDLMG VNNDNLVMVD LGSNGDHHQH HMGLNHGLGL NNNNNNDGFH GFCPASNGNG GGGLMDISTS QRLMLSNYDH HHYNHHEDNQ
301: RVTSIMDVKP SPKLLSLDWQ QCQGNSNGSG GKSDGGGYVG GSYISGLGSS WNGLMSGYGS STKTNYLV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSHIVTTN TSDLMALAHS HQNYQNDSLG FSHFGANGMM GSSTALGHSN VGFLESKYGG
201: LLSPIPRPID FLDSKFDLMG VNNDNLVMVD LGSNGDHHQH HMGLNHGLGL NNNNNNDGFH GFCPASNGNG GGGLMDISTS QRLMLSNYDH HHYNHHEDNQ
301: RVTSIMDVKP SPKLLSLDWQ QCQGNSNGSG GKSDGGGYVG GSYISGLGSS WNGLMSGYGS STKTNYLV
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.