Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G301500.1 | Wheat | nucleus | 98.69 | 98.69 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 97.71 | 97.71 |
| EES05649 | Sorghum | nucleus | 74.18 | 76.95 |
| Zm00001d017788_P001 | Maize | nucleus | 70.59 | 75.0 |
| Os02t0707200-00 | Rice | nucleus | 70.26 | 74.65 |
| Zm00001d051577_P001 | Maize | nucleus | 70.26 | 72.39 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 38.24 | 37.99 |
| Solyc06g071480.2.1 | Tomato | nucleus | 33.99 | 37.28 |
| PGSC0003DMT400069680 | Potato | nucleus | 33.99 | 37.14 |
| KRH63537 | Soybean | nucleus | 40.2 | 35.76 |
| Solyc03g112930.2.1 | Tomato | nucleus | 38.24 | 35.14 |
| KRH54395 | Soybean | nucleus | 39.87 | 34.56 |
| PGSC0003DMT400046598 | Potato | nucleus | 37.25 | 34.55 |
| KRH03289 | Soybean | nucleus | 36.27 | 33.64 |
| KRH57071 | Soybean | nucleus | 35.29 | 32.73 |
| CDY16754 | Canola | nucleus | 34.97 | 31.47 |
| Bra035873.1-P | Field mustard | nucleus | 34.97 | 31.47 |
| CDX87270 | Canola | nucleus | 34.97 | 31.38 |
| CDX84369 | Canola | nucleus | 36.27 | 29.92 |
| Bra010136.1-P | Field mustard | nucleus | 35.95 | 29.89 |
| CDY00341 | Canola | nucleus | 35.95 | 29.89 |
| AT5G62940.1 | Thale cress | nucleus | 34.97 | 28.76 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 24.51 | 27.78 |
| TraesCS6D01G236700.1 | Wheat | nucleus | 28.1 | 21.99 |
| TraesCS2D01G399500.1 | Wheat | nucleus | 27.12 | 21.96 |
| TraesCS7D01G215300.1 | Wheat | nucleus | 20.26 | 21.83 |
| TraesCS6D01G268400.1 | Wheat | nucleus | 20.59 | 21.72 |
| TraesCS5D01G093800.2 | Wheat | nucleus | 23.53 | 20.87 |
| TraesCS2D01G076600.1 | Wheat | nucleus | 21.9 | 20.43 |
| TraesCS3D01G370100.1 | Wheat | nucleus | 21.9 | 20.24 |
| TraesCS4D01G207600.1 | Wheat | nucleus | 24.51 | 19.68 |
| TraesCS3D01G537500.1 | Wheat | nucleus | 23.2 | 18.59 |
| TraesCS5D01G161000.1 | Wheat | nucleus | 19.93 | 17.84 |
| TraesCS2D01G231600.1 | Wheat | nucleus | 20.59 | 17.7 |
| TraesCS1D01G036700.2 | Wheat | nucleus | 20.91 | 17.49 |
| TraesCS1D01G274700.1 | Wheat | mitochondrion | 20.91 | 16.98 |
| TraesCS5D01G412000.1 | Wheat | nucleus | 19.93 | 16.05 |
| TraesCS3D01G537400.1 | Wheat | nucleus | 19.61 | 15.96 |
| TraesCS5D01G493000.1 | Wheat | nucleus | 23.53 | 15.82 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G254200.1 | EnsemblPlantsGene:TraesCS6D01G254200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | PFAM:PD007478 | PFAM:PF02701 |
| PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr6D:-:358325432..358328684
Molecular Weight (calculated)
32459.6 Da
IEP (calculated)
8.133
GRAVY (calculated)
-0.342
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAGAAHPMH FCMDSDWLKG IVPEDQGGMG SSSPSGELII ACPEPMQAQQ AADRRLRPQH DQPLKCPRCD STHTKFCYYN NYSLSQPRYF CKTCRRYWTK
101: GGSLRNVPVG GGCRKNKRAS AAKKPSAAAA IAPPISMMQQ LHHGRHMAET GLHLSFSGMP PPPVSAADPL CSLGLFDWKY DHILSGSGGF ESANSEAHFT
201: GPGMMGIANG SGGGGAEYHA LNALRYAAGL GEHLALPFGG ATSRAERDSV VAEMKPQAER LLSLEWCGEA SRAPTETSIS SLGGLGLWSG MVTGAAHHHH
301: GSSAAI
101: GGSLRNVPVG GGCRKNKRAS AAKKPSAAAA IAPPISMMQQ LHHGRHMAET GLHLSFSGMP PPPVSAADPL CSLGLFDWKY DHILSGSGGF ESANSEAHFT
201: GPGMMGIANG SGGGGAEYHA LNALRYAAGL GEHLALPFGG ATSRAERDSV VAEMKPQAER LLSLEWCGEA SRAPTETSIS SLGGLGLWSG MVTGAAHHHH
301: GSSAAI
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.