Factsheet for TraesCS5D01G093800.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G087600.3	Wheat	nucleus	97.97	98.26
TraesCS5A01G078100.1	Wheat	nucleus	97.39	98.25
HORVU5Hr1G021290.1	Barley	nucleus	97.97	97.97
Os12t0569900-01	Rice	nucleus	77.39	76.72
OQU79380	Sorghum	nucleus, vacuole	71.88	72.94
Zm00001d041549_P001	Maize	nucleus	71.59	72.01
GSMUA_Achr10P...	Banana	nucleus	35.07	35.91
PGSC0003DMT400078164	Potato	nucleus	32.75	35.31
KRH46814	Soybean	nucleus	35.94	33.79
KRG99864	Soybean	nucleus	35.36	33.61
Solyc06g076030.2.1	Tomato	nucleus	32.17	33.23
TraesCS4D01G207600.1	Wheat	nucleus	33.62	30.45
KRH70477	Soybean	nucleus	30.72	28.57
TraesCS1D01G036700.2	Wheat	nucleus	29.57	27.87
TraesCS2D01G076600.1	Wheat	nucleus	26.09	27.44
TraesCS5D01G493000.1	Wheat	nucleus	35.94	27.25
TraesCS2D01G231600.1	Wheat	nucleus	27.83	26.97
TraesCS3D01G537400.1	Wheat	nucleus	28.99	26.6
TraesCS2D01G399500.1	Wheat	nucleus	25.8	23.55
TraesCS6D01G254200.1	Wheat	nucleus	20.87	23.53
TraesCS3D01G537500.1	Wheat	nucleus	25.51	23.04
TraesCS7D01G215300.1	Wheat	nucleus	18.84	22.89
TraesCS6D01G268400.1	Wheat	nucleus	18.84	22.41
TraesCS6D01G236700.1	Wheat	nucleus	24.06	21.23
TraesCS3D01G370100.1	Wheat	nucleus	18.55	19.34
TraesCS5D01G412000.1	Wheat	nucleus	20.0	18.16
TraesCS5D01G161000.1	Wheat	nucleus	17.97	18.13
TraesCS1D01G274700.1	Wheat	mitochondrion	19.42	17.77

Protein Annotations

EnsemblPlants:TraesCS5D01G093800.2	EnsemblPlantsGene:TraesCS5D01G093800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF75	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr5D:-:103175243..103176547

Molecular Weight (calculated)

35683.7 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.379

Length

345 amino acids

Sequence
(BLAST)

001: MVFSSFPIFL DPPSWTQMQQ QQPLQCFMGG GGGSEHQHHQ LIPASTGQLA PLPDVPGNTA ASAPAVAGSS SASLQLVVSG QQGNPGEQPP RPSVSMTERA
101: RMARVPLPEP GTLRCPRCDS ANTKFCYFNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRSS KKSSRQGQGQ GGGGAVAAAT SSSSTTSTST
201: TTSAAAATAA DVIASMQALP HHLGGLPAAA ALEASLEGYH SHSHHQHHNL PFLPPQFLQQ GLHGYHFADG DIGSQLADGF PRGVASGLLA QLASIKMEEH
301: GAGAGGTGGG FVGAHEQYWP GSGGGGGWPT EFLSGFSSNS SGNVM

Best Arabidopsis Sequence Match ( AT3G55370.1 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.