Factsheet for TraesCS3D01G537500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G608900.1	Wheat	nucleus	76.18	81.97
TraesCS3A01G532200.1	Wheat	nucleus	72.51	78.03
TraesCS3B01G609000.1	Wheat	nucleus	68.32	74.15
TraesCS3B01G609100.1	Wheat	nucleus	67.28	74.06
TraesCS3A01G532100.1	Wheat	nucleus	72.25	72.82
HORVU3Hr1G116270.2	Barley	nucleus	65.97	72.41
Os05t0112200-01	Rice	nucleus	24.61	32.41
TraesCS3D01G537400.1	Wheat	nucleus	31.68	32.18
Zm00001d035651_P001	Maize	nucleus	28.53	29.86
TraesCS1D01G036700.2	Wheat	nucleus	28.27	29.51
KXG21095	Sorghum	nucleus	28.01	27.79
Zm00001d011058_P001	Maize	nucleus	24.08	27.22
TraesCS5D01G093800.2	Wheat	nucleus	23.04	25.51
TraesCS5D01G493000.1	Wheat	nucleus	28.27	23.74
KRH70477	Soybean	nucleus	22.77	23.45
TraesCS6D01G254200.1	Wheat	nucleus	18.59	23.2
KRH46814	Soybean	nucleus	22.25	23.16
KRG99864	Soybean	nucleus	21.73	22.86
TraesCS4D01G207600.1	Wheat	nucleus	22.51	22.57
TraesCS6D01G268400.1	Wheat	nucleus	16.75	22.07
TraesCS7D01G215300.1	Wheat	nucleus	15.18	20.42
TraesCS2D01G399500.1	Wheat	nucleus	20.16	20.37
TraesCS2D01G231600.1	Wheat	nucleus	18.32	19.66
TraesCS3D01G370100.1	Wheat	nucleus	17.02	19.64
TraesCS6D01G236700.1	Wheat	nucleus	19.9	19.44
TraesCS2D01G076600.1	Wheat	nucleus	15.45	17.99
TraesCS5D01G161000.1	Wheat	nucleus	14.92	16.67
TraesCS1D01G274700.1	Wheat	mitochondrion	16.23	16.45
TraesCS5D01G412000.1	Wheat	nucleus	15.97	16.05

Protein Annotations

EnsemblPlants:TraesCS3D01G537500.1	EnsemblPlantsGene:TraesCS3D01G537500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF75	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr3D:-:610627337..610629582

Molecular Weight (calculated)

41603.1 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.804

Length

382 amino acids

Sequence
(BLAST)

001: MIFLPAFPDS STFWNTDHNQ LQLQQFGTNN HSTTTFSPAS PSDGECSNNN NNNNNNNNNN NNNNNNNNNN NNNKNNNQKR FMAMAKAGSC AAGGGDDGCG
101: GAGDGDCGGN GKSKSMSMSE RARLARLPQP VSGLNCPRCD STNTKFCYFN NYSLTQPRHF CRSCRRYWTH GGMLRNVPVG GGYRRHAKRR AKPKVVSDTS
201: RAAMVGTSSV TSTMSSSTTY VTGTGTAPPR LQYPMFSSAP SHDNQFVDSF DPANIGLSFP IRLLFADSDA YAMDDCAQNH HHHAHGNGME QLSATRNSFP
301: FIHVVDHQMS GLPAEAMPIT MAAMEGMFHL RLQSVGGGTG DEIGGQQLHH PLAKRNHKRQ DYPSSRGMYR DVVNGNCGGD YI

Best Arabidopsis Sequence Match ( AT3G55370.1 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.