Factsheet for TraesCS5D01G161000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 17021941

gfp PMID: 17021941 doi

G Dong, Z Ni, Y Yao, X Nie, Q Sun

Department of Plant Genetics & Breeding and State Key Laboratory for Agrobiotechnology, China Agricultural University, Haidian district, Beijing, 100094, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G155900.1	Wheat	nucleus	90.06	91.12
TraesCS5B01G154100.1	Wheat	nucleus	86.55	87.57
HORVU5Hr1G048700.1	Barley	nucleus	82.16	84.38
Os02t0252400-01	Rice	nucleus	41.81	38.34
TraesCS6D01G236700.1	Wheat	nucleus	26.9	23.53
TraesCS2D01G399500.1	Wheat	nucleus	24.85	22.49
GSMUA_Achr6P19530_001	Banana	nucleus	15.5	21.46
TraesCS7D01G215300.1	Wheat	nucleus	16.96	20.42
TraesCS6D01G268400.1	Wheat	nucleus	17.25	20.34
TraesCS6D01G254200.1	Wheat	nucleus	17.84	19.93
TraesCS2D01G076600.1	Wheat	nucleus	18.71	19.51
TraesCS5D01G093800.2	Wheat	nucleus	18.13	17.97
TraesCS3D01G370100.1	Wheat	nucleus	17.25	17.82
TraesCS2D01G231600.1	Wheat	nucleus	18.13	17.42
TraesCS4D01G207600.1	Wheat	nucleus	19.3	17.32
TraesCS1D01G274700.1	Wheat	mitochondrion	17.54	15.92
TraesCS1D01G036700.2	Wheat	nucleus	16.96	15.85
TraesCS5D01G412000.1	Wheat	nucleus	16.67	15.0
TraesCS3D01G537500.1	Wheat	nucleus	16.67	14.92
TraesCS3D01G537400.1	Wheat	nucleus	16.37	14.89
TraesCS5D01G493000.1	Wheat	nucleus	17.54	13.19

Protein Annotations

EnsemblPlants:TraesCS5D01G161000.1	EnsemblPlantsGene:TraesCS5D01G161000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PFAM:PD007478	PFAM:PF02701	PFscan:PS50884
ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:	:

Description

No Description!

Coordinates

chr5D:-:251063289..251065090

Molecular Weight (calculated)

35468.7 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.421

Length

342 amino acids

Sequence
(BLAST)

001: MRLLLHNLLQ YRMEEVFPSN SKSKAGQMAG EAIAGAEKKP RPKPEQKVEC PRCKSGNTKF CYYNNYSMSQ PRYFCKACRR YWTHGGSLRN VPIGGGCRKP
101: KRSGTSDAHK LGVASSPEPT TVVPPSTCTG MNFANVLPTF MSVGFEIPSS LSLTAFGSSS SSNTAAMMSP GGTTSFLDVL RGGAGGLLDG SLSQNNGYYY
201: GGPAIGSGNG MLMTPPAVSF GIPVPMQQHG DLVVGGNGIG AATASIFQGA TSEEGDDGMG GVMGLQWQPQ VGNGGGGGGV SGGVHHLGTG NNVTMGNSNI
301: HNNNNNDSGG DDNNGGSSRD CYWINNGGSN PWQSLLNSSS LM

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.