Factsheet for TraesCS1D01G274700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G284300.1	Wheat	nucleus	80.37	95.89
TraesCS1A01G275000.1	Wheat	nucleus	79.05	94.3
HORVU1Hr1G074140.1	Barley	nucleus, vacuole	76.92	84.3
Os05t0440000-00	Rice	nucleus	57.29	66.06
Zm00001d038281_P001	Maize	mitochondrion, nucleus	51.72	59.63
EES18302	Sorghum	plastid	53.85	55.46
TraesCS3D01G370100.1	Wheat	nucleus	46.15	52.57
GSMUA_Achr8P32880_001	Banana	nucleus	18.57	28.0
CDY50231	Canola	nucleus	17.51	26.09
Bra017906.1-P	Field mustard	nucleus	17.51	26.09
VIT_18s0001g15730.t01	Wine grape	nucleus	19.36	25.98
CDY04620	Canola	nucleus	17.24	25.59
CDY00373	Canola	nucleus	17.51	25.38
AT1G21340.1	Thale cress	nucleus	17.51	25.38
KRH64521	Soybean	nucleus	19.1	24.91
PGSC0003DMT400002060	Potato	nucleus	17.51	24.81
Solyc04g070960.1.1	Tomato	nucleus	17.51	24.72
Bra012277.1-P	Field mustard	nucleus	16.98	24.52
CDY61064	Canola	nucleus	16.98	24.52
KRH53419	Soybean	nucleus	18.57	24.22
TraesCS7D01G215300.1	Wheat	nucleus	16.18	21.48
TraesCS6D01G254200.1	Wheat	nucleus	16.98	20.91
TraesCS6D01G268400.1	Wheat	nucleus	15.92	20.69
TraesCS2D01G399500.1	Wheat	nucleus	20.69	20.63
TraesCS5D01G093800.2	Wheat	nucleus	17.77	19.42
TraesCS2D01G076600.1	Wheat	nucleus	16.71	19.21
TraesCS6D01G236700.1	Wheat	nucleus	19.36	18.67
TraesCS1D01G036700.2	Wheat	nucleus	18.04	18.58
TraesCS4D01G207600.1	Wheat	nucleus	18.04	17.85
TraesCS5D01G161000.1	Wheat	nucleus	15.92	17.54
TraesCS3D01G537400.1	Wheat	nucleus	16.98	17.02
TraesCS2D01G231600.1	Wheat	nucleus	15.92	16.85
TraesCS3D01G537500.1	Wheat	nucleus	16.45	16.23
TraesCS5D01G412000.1	Wheat	nucleus	16.18	16.05
TraesCS5D01G493000.1	Wheat	nucleus	17.77	14.73

Protein Annotations

EnsemblPlants:TraesCS1D01G274700.1	EnsemblPlantsGene:TraesCS1D01G274700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF72	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr1D:+:370341838..370342971

Molecular Weight (calculated)

40202.5 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.284

Length

377 amino acids

Sequence
(BLAST)

001: MAYRGKHLVL ASAALPPSHV YIRLPPLSPL ASASFQILSH HRIPTFPRSP ACLLISSSPI VAMLSSHSES MLAYAAAAGR RAMLVDPRRY RPNVEVAPNC
101: PRCDSPNTKF CYYNNYSLSQ PRYFCKGCRR YWTKGGSLRN VPVGGGCRKN RRGKPVRSMA EADTASPNHG AAVFSHRFHG PVRPDLLLEG MVGNPAELGQ
201: PSSTEAEKPA GAADGPTIDL ALLYSKFLSH QPLAEQCAVV PESADTSSGS STEMSPPALS SPGQHRLGEI CGPASSTEPS ATTMLQCGDA RAHALGEFNF
301: SVDQSCYDSL GLPTDGGDLT MLPSAWDQEA KYEPFSSLPE EDAMSLHEGV PAGDDVWSKV LGCQGLEAAL SAGLDRC

Best Arabidopsis Sequence Match ( AT3G52440.2 )
(BLAST)

001: MHAYIIHSYS DRLKKSERDM ERAEALTSSF IWRPNANANA EITPSCPRCG SSNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG GGCRKSRRPK
101: SSSGNNTKTS LTANSGNPGG GSPSIDLALV YANFLNPKPD ESILQENCDL ATTDFLVDNP TGTSMDPSWS MDINDGHHDH YINPVEHIVE ECGYNGLPPF
201: PGEELLSLDT NGVWSDALLI GHNHVDVGVT PVQAVHEPVV HFADESNDST NLLFGSWSPF DFTADG

Arabidopsis Description

Dof-type zinc finger DNA-binding family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.