Factsheet for TraesCS4D01G207600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G097800.1	Wheat	nucleus	98.16	97.65
TraesCS4B01G206800.1	Wheat	nucleus	96.33	97.09
Bra009587.1-P	Field mustard	nucleus	21.52	46.33
KRH46814	Soybean	nucleus	35.43	36.78
KRG99864	Soybean	nucleus	34.91	36.64
KRH70477	Soybean	nucleus	33.07	33.96
Solyc09g010680.2.1	Tomato	nucleus	35.43	33.92
TraesCS5D01G093800.2	Wheat	nucleus	30.45	33.62
CDY40358	Canola	nucleus	29.13	33.33
PGSC0003DMT400023033	Potato	nucleus	35.17	33.25
CDY70704	Canola	nucleus	31.23	32.6
CDY55422	Canola	nucleus	33.07	31.42
TraesCS1D01G036700.2	Wheat	nucleus	30.18	31.42
CDY55549	Canola	nucleus	32.81	31.09
CDX80822	Canola	nucleus	33.07	31.03
Bra005725.1-P	Field mustard	nucleus	32.81	31.02
AT5G02460.1	Thale cress	nucleus	32.28	30.83
CDY04855	Canola	nucleus	32.81	30.79
Bra028872.1-P	Field mustard	nucleus	32.81	30.79
TraesCS5D01G493000.1	Wheat	nucleus	36.48	30.55
TraesCS3D01G537400.1	Wheat	nucleus	28.35	28.72
TraesCS2D01G076600.1	Wheat	nucleus	23.36	27.13
TraesCS2D01G231600.1	Wheat	nucleus	24.93	26.69
TraesCS6D01G254200.1	Wheat	nucleus	19.68	24.51
TraesCS6D01G268400.1	Wheat	nucleus	18.11	23.79
TraesCS6D01G236700.1	Wheat	nucleus	23.88	23.27
TraesCS3D01G537500.1	Wheat	nucleus	22.57	22.51
TraesCS2D01G399500.1	Wheat	nucleus	21.78	21.96
TraesCS7D01G215300.1	Wheat	nucleus	16.01	21.48
TraesCS3D01G370100.1	Wheat	nucleus	18.11	20.85
TraesCS5D01G161000.1	Wheat	nucleus	17.32	19.3
TraesCS1D01G274700.1	Wheat	mitochondrion	17.85	18.04
TraesCS5D01G412000.1	Wheat	nucleus	17.32	17.37
Bra009588.1-P	Field mustard	plastid	7.87	16.85

Protein Annotations

EnsemblPlants:TraesCS4D01G207600.1	EnsemblPlantsGene:TraesCS4D01G207600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF65	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr4D:+:356561885..356563255

Molecular Weight (calculated)

39474.2 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.557

Length

381 amino acids

Sequence
(BLAST)

001: MVFPPAAAYL DPPNWNNQQG QQQRTTGGGG VGDAQHMPVG PTAGTAAGTP EVGGLPRSSA ANEAAAGQQA RPNSMTERAR MARVPQPEPA LKCPRCDSTN
101: TKFCYYNNYS LSQPRHFCKA CRRYWTRGGA LRSVPVGGGC RRNKRSSKSS AGAASSSKPS SSSARQLPGG ASSMPSTTAS TTLGADGASI PPGLSSMSHH
201: LPFMGAMHPP GANLGLAFSA GLPQLAMQQQ HHHMDGVDQF PLASGGGATF GASLEQWRVQ QQQQFPFLEL PPAPPMYQLG LQANRAAGSS AAAPAPSPAM
301: FTLGQSSAST ARRDEGSMKQ ADSKGQEMTL QRQFMMEALR QGDAVWGGNA SDNNGNGSGS WTMNIPGFHS SSGGGDGGGL L

Best Arabidopsis Sequence Match ( AT3G55370.2 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.