Factsheet for PGSC0003DMT400023033

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010680.2.1	Tomato	nucleus	94.29	95.48
Bra009587.1-P	Field mustard	nucleus	23.08	52.54
PGSC0003DMT400049288	Potato	nucleus	44.66	48.13
CDY40358	Canola	nucleus	34.74	42.04
CDY70704	Canola	nucleus	37.47	41.37
PGSC0003DMT400060216	Potato	nucleus	30.27	40.4
PGSC0003DMT400078164	Potato	nucleus	31.76	40.0
Bra005725.1-P	Field mustard	nucleus	39.45	39.45
CDY55549	Canola	nucleus	39.21	39.3
CDX80822	Canola	nucleus	39.45	39.16
CDY04855	Canola	nucleus	39.45	39.16
CDY55422	Canola	nucleus	38.96	39.15
AT5G02460.1	Thale cress	nucleus	38.71	39.1
Bra028872.1-P	Field mustard	nucleus	39.21	38.92
TraesCS4B01G206800.1	Wheat	nucleus	33.25	35.45
TraesCS4D01G207600.1	Wheat	nucleus	33.25	35.17
TraesCS4A01G097800.1	Wheat	nucleus	33.25	34.99
Os07t0236700-01	Rice	nucleus	30.27	34.56
Os05t0112200-01	Rice	nucleus	24.32	33.79
Zm00001d035651_P001	Maize	nucleus	27.3	30.14
Zm00001d011058_P001	Maize	nucleus	24.81	29.59
PGSC0003DMT400033382	Potato	nucleus	18.86	29.46
KXG21095	Sorghum	nucleus	28.04	29.35
PGSC0003DMT400001174	Potato	nucleus	18.61	29.3
HORVU1Hr1G005390.2	Barley	nucleus	26.05	28.77
PGSC0003DMT400047705	Potato	nucleus	18.61	28.74
PGSC0003DMT400019416	Potato	nucleus	20.35	27.15
Bra009588.1-P	Field mustard	plastid	11.66	26.4
PGSC0003DMT400058729	Potato	nucleus	12.9	26.4
HORVU3Hr1G116220.1	Barley	nucleus, plastid	25.06	25.44
PGSC0003DMT400010397	Potato	nucleus	20.1	25.39
HORVU3Hr1G116260.1	Barley	nucleus	19.35	24.76
PGSC0003DMT400065271	Potato	nucleus	18.36	24.75
HORVU3Hr1G116270.2	Barley	nucleus	21.09	24.43
PGSC0003DMT400025984	Potato	nucleus	16.38	23.57
PGSC0003DMT400076397	Potato	nucleus	16.63	23.51
PGSC0003DMT400048612	Potato	nucleus	15.63	23.25
PGSC0003DMT400075051	Potato	nucleus	16.63	23.02
PGSC0003DMT400069680	Potato	nucleus	15.88	22.86
PGSC0003DMT400057782	Potato	mitochondrion	15.88	22.7
PGSC0003DMT400002060	Potato	nucleus	14.89	22.56
PGSC0003DMT400000349	Potato	nucleus	14.64	22.26
PGSC0003DMT400041580	Potato	nucleus	20.84	22.22
PGSC0003DMT400076447	Potato	nucleus	21.84	22.11
PGSC0003DMT400031928	Potato	nucleus	16.87	20.48
PGSC0003DMT400046598	Potato	nucleus	16.38	20.0
PGSC0003DMT400055052	Potato	nucleus	14.39	18.53

Protein Annotations

EntrezGene:102579164	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1AHM9
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400008914	PGSC:PGSC0003DMG400008914	EnsemblPlants:PGSC0003DMT400023033	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI0002967B74	RefSeq:XP_006341037.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008914]

Coordinates

chr9:-:1919944..1922063

Molecular Weight (calculated)

42973.5 Da

IEP (calculated)

9.514

GRAVY (calculated)

-0.738

Length

403 amino acids

Sequence
(BLAST)

001: MNFSSIPAYL DPANWQQQSG STIQNHHHQQ QQLTSAPPPP VLPPSPVVVP LQPHGGGGAG SIRPGSMADR ARMANIPMPE TALKCPRCDS ANTKFCYFNN
101: YSLSQPRHFC KACKRYWTRG GALRSVPVGG GCRRNKRSNN NNKNSNNNNN NNSSKSPASS TSTDGRQGTN NSGSSTTISS HSNSFSGPAS ATSLLGLMSP
201: QIPPLRFMSP LGQFSSDHHH HHHFTPSNHM NLNFSTSSCG NILGGTTEGM MVNNNNMLGA GAGAGVGVGG HVASLLSSGN LEHWKMQQQF PNFLGGFDPS
301: NSPSSYPFQG GVHEAVQYLG GESTSQISRP KISTSMLNQM ASVKMEDNNN NSNNNNNNNN QDQSSLSRQL LGIQGNNENW NTSANAWSDL SASFSSSSPS
401: NAL

Best Arabidopsis Sequence Match ( AT5G02460.1 )
(BLAST)

001: MVFSSFPTYP DHSSNWQQQH QPITTTVGFT GNNINQQFLP HHPLPPQQQQ TPPQLHHNNG NGGVAVPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC
101: DSTNTKFCYF NNYSLTQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSSGGGGGS TSSGNSKSQD SATSNDQYHH RAMANNQMGP PSSSSSLSSL
201: LSSYNAGLIP GHDHNSNNNN ILGLGSSLPP LKLMPPLDFT DNFTLQYGAV SAPSYHIGGG SSGGAAALLN GFDQWRFPAT NQLPLGGLDP FDQQHQMEQQ
301: NPGYGLVTGS GQYRPKNIFH NLISSSSSAS SAMVTATASQ LASVKMEDSN NQLNLSRQLF GDEQQLWNIH GAAAASTAAA TSSWSEVSNN FSSSSTSNI

Arabidopsis Description

DOF5.1Dof zinc finger protein DOF5.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.