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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g076030.2.1 Tomato nucleus 93.44 89.52
GSMUA_Achr5P28660_001 Banana nucleus 37.5 43.32
GSMUA_Achr10P... Banana nucleus 38.12 42.07
GSMUA_Achr9P03270_001 Banana nucleus 28.12 40.54
PGSC0003DMT400060216 Potato nucleus 38.12 40.4
GSMUA_Achr8P02600_001 Banana nucleus 35.0 39.72
GSMUA_Achr5P29110_001 Banana nucleus 42.19 39.71
GSMUA_Achr8P02150_001 Banana nucleus 39.06 37.65
GSMUA_Achr11P... Banana nucleus 41.56 37.05
GSMUA_Achr6P34180_001 Banana nucleus 38.12 36.75
PGSC0003DMT400049288 Potato nucleus 41.56 35.56
GSMUA_Achr10P... Banana nucleus 37.19 35.31
Zm00001d041549_P001 Maize nucleus 35.62 33.24
TraesCS5B01G087600.3 Wheat nucleus 35.62 33.14
TraesCS5A01G078100.1 Wheat nucleus 35.31 33.04
OQU79380 Sorghum nucleus, vacuole 35.0 32.94
Zm00001d030727_P002 Maize nucleus 35.0 32.84
HORVU5Hr1G021290.1 Barley nucleus 35.31 32.75
TraesCS5D01G093800.2 Wheat nucleus 35.31 32.75
Os12t0569900-01 Rice nucleus 35.31 32.47
PGSC0003DMT400023033 Potato nucleus 40.0 31.76
PGSC0003DMT400001174 Potato nucleus 22.81 28.52
PGSC0003DMT400058729 Potato nucleus 17.5 28.43
PGSC0003DMT400033382 Potato nucleus 20.94 25.97
PGSC0003DMT400019416 Potato nucleus 23.75 25.17
PGSC0003DMT400047705 Potato nucleus 19.69 24.14
PGSC0003DMT400065271 Potato nucleus 22.5 24.08
PGSC0003DMT400025984 Potato nucleus 20.62 23.57
PGSC0003DMT400000349 Potato nucleus 19.06 23.02
PGSC0003DMT400048612 Potato nucleus 19.38 22.88
PGSC0003DMT400076397 Potato nucleus 20.0 22.46
PGSC0003DMT400057782 Potato mitochondrion 19.38 21.99
PGSC0003DMT400010397 Potato nucleus 21.88 21.94
PGSC0003DMT400031928 Potato nucleus 22.5 21.69
PGSC0003DMT400002060 Potato nucleus 17.81 21.43
PGSC0003DMT400069680 Potato nucleus 18.44 21.07
PGSC0003DMT400041580 Potato nucleus 24.69 20.9
PGSC0003DMT400076447 Potato nucleus 25.62 20.6
PGSC0003DMT400055052 Potato nucleus 19.38 19.81
PGSC0003DMT400046598 Potato nucleus 20.31 19.7
PGSC0003DMT400075051 Potato nucleus 16.88 18.56
Protein Annotations
MapMan:15.5.1.5EMBL:AJ242853ProteinID:CAB89831ProteinID:CAB89831.1GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR003851UniProt:M1CZI4PFAM:PD007478PFAM:PF02701EnsemblPlantsGene:PGSC0003DMG400030406PGSC:PGSC0003DMG400030406
EnsemblPlants:PGSC0003DMT400078164ScanProsite:PS01361PFscan:PS50884PANTHER:PTHR31992PANTHER:PTHR31992:SF66UniParc:UPI000296310E
InterPro:Znf_DofSEG:seg::::
Description
Dof zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030406]
Coordinates
chr6:-:56537028..56538529
Molecular Weight (calculated)
34654.0 Da
IEP (calculated)
9.288
GRAVY (calculated)
-0.787
Length
320 amino acids
Sequence
(BLAST)
001: MVFSSFPVYL DHPNLHQLQQ PDGHQQGNTG LENPTLQPPP MQVGASPGSI RPGSMVDRAR LAKIPLPEAG LKCPRCDSTN TKFCYFNNYN LSQPRHFCKT
101: CRRYWTRGGA LRSVPVGGGC RRNKRSKSSN NNNSSKIAGS NVNTNTIASG TSTSASPSSC STEIMNGRHH FPHEQPPQLN PLMAAFQNLN HHYGGFQSPP
201: LVSTHHGNGT GSLGHHHEMG FQIGSNTNNT NNLPVPSGGG SDHQWRLPSL AANTNLYPFQ HGTESSSVNN NNINAHDDQG LNSTKQFLGT MENNTNQYWG
301: GNAWTGFSGL NSSSSASHLL
Best Arabidopsis Sequence Match ( AT3G55370.1 )
(BLAST)
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.