Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc06g076030.2.1 | Tomato | nucleus | 93.44 | 89.52 |
GSMUA_Achr5P28660_001 | Banana | nucleus | 37.5 | 43.32 |
GSMUA_Achr10P... | Banana | nucleus | 38.12 | 42.07 |
GSMUA_Achr9P03270_001 | Banana | nucleus | 28.12 | 40.54 |
PGSC0003DMT400060216 | Potato | nucleus | 38.12 | 40.4 |
GSMUA_Achr8P02600_001 | Banana | nucleus | 35.0 | 39.72 |
GSMUA_Achr5P29110_001 | Banana | nucleus | 42.19 | 39.71 |
GSMUA_Achr8P02150_001 | Banana | nucleus | 39.06 | 37.65 |
GSMUA_Achr11P... | Banana | nucleus | 41.56 | 37.05 |
GSMUA_Achr6P34180_001 | Banana | nucleus | 38.12 | 36.75 |
PGSC0003DMT400049288 | Potato | nucleus | 41.56 | 35.56 |
GSMUA_Achr10P... | Banana | nucleus | 37.19 | 35.31 |
Zm00001d041549_P001 | Maize | nucleus | 35.62 | 33.24 |
TraesCS5B01G087600.3 | Wheat | nucleus | 35.62 | 33.14 |
TraesCS5A01G078100.1 | Wheat | nucleus | 35.31 | 33.04 |
OQU79380 | Sorghum | nucleus, vacuole | 35.0 | 32.94 |
Zm00001d030727_P002 | Maize | nucleus | 35.0 | 32.84 |
HORVU5Hr1G021290.1 | Barley | nucleus | 35.31 | 32.75 |
TraesCS5D01G093800.2 | Wheat | nucleus | 35.31 | 32.75 |
Os12t0569900-01 | Rice | nucleus | 35.31 | 32.47 |
PGSC0003DMT400023033 | Potato | nucleus | 40.0 | 31.76 |
PGSC0003DMT400001174 | Potato | nucleus | 22.81 | 28.52 |
PGSC0003DMT400058729 | Potato | nucleus | 17.5 | 28.43 |
PGSC0003DMT400033382 | Potato | nucleus | 20.94 | 25.97 |
PGSC0003DMT400019416 | Potato | nucleus | 23.75 | 25.17 |
PGSC0003DMT400047705 | Potato | nucleus | 19.69 | 24.14 |
PGSC0003DMT400065271 | Potato | nucleus | 22.5 | 24.08 |
PGSC0003DMT400025984 | Potato | nucleus | 20.62 | 23.57 |
PGSC0003DMT400000349 | Potato | nucleus | 19.06 | 23.02 |
PGSC0003DMT400048612 | Potato | nucleus | 19.38 | 22.88 |
PGSC0003DMT400076397 | Potato | nucleus | 20.0 | 22.46 |
PGSC0003DMT400057782 | Potato | mitochondrion | 19.38 | 21.99 |
PGSC0003DMT400010397 | Potato | nucleus | 21.88 | 21.94 |
PGSC0003DMT400031928 | Potato | nucleus | 22.5 | 21.69 |
PGSC0003DMT400002060 | Potato | nucleus | 17.81 | 21.43 |
PGSC0003DMT400069680 | Potato | nucleus | 18.44 | 21.07 |
PGSC0003DMT400041580 | Potato | nucleus | 24.69 | 20.9 |
PGSC0003DMT400076447 | Potato | nucleus | 25.62 | 20.6 |
PGSC0003DMT400055052 | Potato | nucleus | 19.38 | 19.81 |
PGSC0003DMT400046598 | Potato | nucleus | 20.31 | 19.7 |
PGSC0003DMT400075051 | Potato | nucleus | 16.88 | 18.56 |
Protein Annotations
MapMan:15.5.1.5 | EMBL:AJ242853 | ProteinID:CAB89831 | ProteinID:CAB89831.1 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
InterPro:IPR003851 | UniProt:M1CZI4 | PFAM:PD007478 | PFAM:PF02701 | EnsemblPlantsGene:PGSC0003DMG400030406 | PGSC:PGSC0003DMG400030406 |
EnsemblPlants:PGSC0003DMT400078164 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | UniParc:UPI000296310E |
InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
Dof zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030406]
Coordinates
chr6:-:56537028..56538529
Molecular Weight (calculated)
34654.0 Da
IEP (calculated)
9.288
GRAVY (calculated)
-0.787
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSFPVYL DHPNLHQLQQ PDGHQQGNTG LENPTLQPPP MQVGASPGSI RPGSMVDRAR LAKIPLPEAG LKCPRCDSTN TKFCYFNNYN LSQPRHFCKT
101: CRRYWTRGGA LRSVPVGGGC RRNKRSKSSN NNNSSKIAGS NVNTNTIASG TSTSASPSSC STEIMNGRHH FPHEQPPQLN PLMAAFQNLN HHYGGFQSPP
201: LVSTHHGNGT GSLGHHHEMG FQIGSNTNNT NNLPVPSGGG SDHQWRLPSL AANTNLYPFQ HGTESSSVNN NNINAHDDQG LNSTKQFLGT MENNTNQYWG
301: GNAWTGFSGL NSSSSASHLL
101: CRRYWTRGGA LRSVPVGGGC RRNKRSKSSN NNNSSKIAGS NVNTNTIASG TSTSASPSSC STEIMNGRHH FPHEQPPQLN PLMAAFQNLN HHYGGFQSPP
201: LVSTHHGNGT GSLGHHHEMG FQIGSNTNNT NNLPVPSGGG SDHQWRLPSL AANTNLYPFQ HGTESSSVNN NNINAHDDQG LNSTKQFLGT MENNTNQYWG
301: GNAWTGFSGL NSSSSASHLL
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.