Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 57.65 | 67.59 |
| GSMUA_Achr7P15150_001 | Banana | nucleus | 30.0 | 56.35 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 44.12 | 54.15 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 44.12 | 53.19 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 37.94 | 52.23 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 47.94 | 49.1 |
| GSMUA_Achr11P... | Banana | nucleus | 51.47 | 48.75 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 30.59 | 46.85 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 45.29 | 46.39 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 43.82 | 45.15 |
| GSMUA_Achr10P... | Banana | nucleus | 44.41 | 44.81 |
| PGSC0003DMT400078164 | Potato | nucleus | 39.71 | 42.19 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 19.41 | 40.99 |
| Solyc06g076030.2.1 | Tomato | nucleus | 38.82 | 39.52 |
| GSMUA_Achr11P... | Banana | nucleus | 27.35 | 31.63 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 20.59 | 31.25 |
| GSMUA_Achr8P11850_001 | Banana | nucleus | 26.76 | 30.54 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 17.35 | 30.26 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 21.76 | 29.6 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 22.94 | 29.32 |
| GSMUA_Achr11P... | Banana | nucleus | 22.94 | 28.68 |
| GSMUA_Achr10P... | Banana | nucleus | 21.47 | 28.29 |
| GSMUA_Achr4P27160_001 | Banana | nucleus | 23.24 | 28.21 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 19.41 | 27.85 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 22.06 | 27.78 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 20.88 | 27.63 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 21.76 | 27.21 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 16.76 | 26.27 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 22.35 | 26.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.18 | 25.81 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 19.41 | 25.48 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 20.59 | 25.45 |
| GSMUA_Achr10P... | Banana | nucleus | 20.29 | 25.37 |
| GSMUA_Achr10P... | Banana | nucleus | 21.18 | 25.26 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 26.76 | 25.0 |
| GSMUA_Achr11P... | Banana | nucleus | 19.41 | 24.91 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 18.82 | 24.9 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 20.0 | 24.82 |
| GSMUA_Achr10P... | Banana | nucleus | 21.18 | 24.66 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 22.06 | 24.51 |
| GSMUA_Achr11P... | Banana | nucleus | 21.18 | 24.32 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 25.88 | 24.31 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 17.65 | 24.29 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 20.59 | 24.05 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 19.12 | 22.81 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 20.29 | 22.48 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 23.24 | 22.25 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 21.18 | 22.09 |
| GSMUA_Achr10P... | Banana | nucleus | 22.06 | 21.55 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 19.12 | 21.52 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 21.47 | 21.28 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 18.53 | 19.87 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 23.82 | 18.75 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G29110_001 | EnsemblPlants:GSMUA_Achr5P29110_001 | EnsemblPlants:GSMUA_Achr5T29110_001 |
| InterPro:IPR003851 | UniProt:M0T2N5 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | UniParc:UPI000296E44C | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative F-box family protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G29110_001]
Coordinates
chr5:-:28984672..28985847
Molecular Weight (calculated)
36081.4 Da
IEP (calculated)
9.149
GRAVY (calculated)
-0.403
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFPSVPVYL DPPNWNQEKI FMSLSLALLE YTVKYTLDLF SLYWHVQQQQ LQLPDAAGGG GEIPQLLPGL AAQRPEAGMA AAGSPRPMSM TERARLAKIP
101: QPDQPLKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRRNKR NKPSGSSSKS TAADRQAGAS SSSSTAAGGG GPIPPSIPQP
201: GHFPFLASTM HALADYGASN LGLNFTGIPT IDAVDYQAGS SSTQAPSVQP LSGLHHFNGD SGNNRITSRV LPTVSGSSLI SQLASVKMED NSQGLNLARQ
301: YPGLPGNEHY WISGEGGSTG SGGWATDLSG FNSSSSGNIL
101: QPDQPLKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRRNKR NKPSGSSSKS TAADRQAGAS SSSSTAAGGG GPIPPSIPQP
201: GHFPFLASTM HALADYGASN LGLNFTGIPT IDAVDYQAGS SSTQAPSVQP LSGLHHFNGD SGNNRITSRV LPTVSGSSLI SQLASVKMED NSQGLNLARQ
301: YPGLPGNEHY WISGEGGSTG SGGWATDLSG FNSSSSGNIL
001: MVFSSLPVNQ FDSQNWQQMI SILVFFSTSR LFKKLFLVDK NLFSCLLQGL MYNVFLTGLI FSLQGNQHQL ECVTTDQNPN NYLRQLSSPP TSQVAGSSQA
101: RVNSMVERAR IAKVPLPEAA LNCPRCDSTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGS LRNVPVGGGF RRNKRSKSRS KSTVVVSTDN TTSTSSLTSR
201: PSYSNPSKFH SYGQIPEFNS NLPILPPLQS LGDYNSSNTG LDFGGTQISN MISGMSSSGG ILDAWRIPPS QQAQQFPFLI NTTGLVQSSN ALYPLLEGGV
301: SATQTRNVKA EENDQDRGRD GDGVNNLSRN FLGNININSG RNEEYTSWGG NSSWTGFTSN NSTGHLSF
101: RVNSMVERAR IAKVPLPEAA LNCPRCDSTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGS LRNVPVGGGF RRNKRSKSRS KSTVVVSTDN TTSTSSLTSR
201: PSYSNPSKFH SYGQIPEFNS NLPILPPLQS LGDYNSSNTG LDFGGTQISN MISGMSSSGG ILDAWRIPPS QQAQQFPFLI NTTGLVQSSN ALYPLLEGGV
301: SATQTRNVKA EENDQDRGRD GDGVNNLSRN FLGNININSG RNEEYTSWGG NSSWTGFTSN NSTGHLSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.