Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26889012
|
gfp PMID:
26889012
doi
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China College of Agriculture, GuangXi University, Nanning 530004, PR China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China wjlu@scau.edu.cn., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P11850_001 | Banana | nucleus | 68.37 | 67.45 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 55.78 | 61.65 |
| GSMUA_Achr4P27160_001 | Banana | nucleus | 53.4 | 56.07 |
| GSMUA_Achr11P... | Banana | nucleus | 50.68 | 54.78 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 27.21 | 49.69 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 37.07 | 48.66 |
| KRH06442 | Soybean | nucleus | 44.22 | 47.1 |
| Solyc03g082840.2.1 | Tomato | nucleus | 39.46 | 44.96 |
| PGSC0003DMT400047705 | Potato | nucleus | 39.46 | 44.44 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 43.2 | 43.49 |
| KRH47883 | Soybean | nucleus | 42.18 | 43.21 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 44.56 | 41.46 |
| PGSC0003DMT400048612 | Potato | nucleus | 37.76 | 40.96 |
| KRG92523 | Soybean | nucleus | 41.5 | 40.4 |
| Solyc10g009360.2.1 | Tomato | nucleus | 34.01 | 38.31 |
| PGSC0003DMT400000349 | Potato | nucleus | 34.01 | 37.74 |
| KRH34272 | Soybean | nucleus | 42.86 | 37.5 |
| Solyc01g096120.2.1 | Tomato | nucleus | 34.69 | 36.96 |
| GSMUA_Achr7P15150_001 | Banana | nucleus | 21.77 | 35.36 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 50.68 | 34.49 |
| GSMUA_Achr10P... | Banana | nucleus | 29.93 | 34.11 |
| CDY72657 | Canola | nucleus | 33.33 | 33.56 |
| CDY71684 | Canola | nucleus | 38.1 | 33.43 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 28.91 | 33.07 |
| CDY35454 | Canola | nucleus | 38.44 | 33.04 |
| AT4G24060.1 | Thale cress | nucleus | 38.44 | 33.04 |
| CDX92613 | Canola | nucleus | 38.1 | 32.65 |
| Bra019247.1-P | Field mustard | nucleus | 38.1 | 32.65 |
| CDY71763 | Canola | nucleus | 37.76 | 32.36 |
| CDY03494 | Canola | nucleus | 37.76 | 32.27 |
| Bra013758.1-P | Field mustard | nucleus | 36.73 | 32.14 |
| Bra010548.1-P | Field mustard | nucleus | 38.1 | 31.82 |
| GSMUA_Achr11P... | Banana | nucleus | 28.57 | 31.7 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 26.19 | 31.17 |
| GSMUA_Achr10P... | Banana | nucleus | 29.93 | 30.88 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 26.19 | 30.8 |
| GSMUA_Achr10P... | Banana | nucleus | 28.23 | 30.51 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 27.89 | 29.82 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 27.55 | 29.78 |
| GSMUA_Achr11P... | Banana | nucleus | 29.93 | 29.73 |
| GSMUA_Achr10P... | Banana | nucleus | 28.91 | 29.31 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 26.87 | 28.83 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 21.09 | 27.93 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 26.19 | 27.8 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 31.63 | 27.35 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 26.19 | 27.3 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 17.69 | 26.67 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 23.81 | 25.93 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 22.79 | 25.87 |
| CDY24798 | Canola | nucleus | 39.8 | 25.83 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 25.51 | 25.77 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 28.57 | 25.3 |
| GSMUA_Achr11P... | Banana | nucleus | 30.61 | 25.07 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 27.21 | 24.24 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 19.39 | 24.05 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 20.07 | 23.89 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 26.87 | 23.8 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 17.35 | 23.5 |
| GSMUA_Achr10P... | Banana | nucleus | 26.87 | 23.44 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 23.81 | 22.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.09 | 22.22 |
| GSMUA_Achr10P... | Banana | nucleus | 21.77 | 21.92 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 26.53 | 21.55 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 22.45 | 21.5 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 18.71 | 21.4 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 25.51 | 20.6 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 19.73 | 20.35 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 20.75 | 20.2 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 21.43 | 19.87 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 23.81 | 19.72 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 21.43 | 19.33 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 22.11 | 18.95 |
| GSMUA_Achr10P... | Banana | nucleus | 22.11 | 18.68 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G03360_001 | EnsemblPlants:GSMUA_Achr11P03360_001 | EnsemblPlants:GSMUA_Achr11T03360_001 |
| InterPro:IPR003851 | UniProt:M0RP16 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF42 | UniParc:UPI000294BE15 | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative Dof zinc finger protein DOF4.6 [Source:GMGC_GENE;Acc:GSMUA_Achr11G03360_001]
Coordinates
chr11:+:2438953..2439972
Molecular Weight (calculated)
31465.1 Da
IEP (calculated)
8.555
GRAVY (calculated)
-0.335
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MCYPWIAAPK FFLWGCGCCQ DIGLVKSMEM VASSSSTVTT TTATASSTFS AARPQVTERR IRPQKEQALH CPRCNSTNTK FCYYNNYSLT QPRYFCKTCR
101: RYWTDGGSLR NVPVGGGSRK NKRPSLSSAA ATTSATSATT SSTAATSSIK FHDGQDLNLA FPHHGLPDNP CNAVGALSAM ELLRSGMTMR GLSPFVTMPL
201: PEYPTGFELQ EFRAPALNFP MEAIAGGEGR EGSSGGYGAL QGVQESAGGR LLFPFEDVKP VVHTSTAAEF ENSRGHGGHP PGFWNGMIGG GGSW
101: RYWTDGGSLR NVPVGGGSRK NKRPSLSSAA ATTSATSATT SSTAATSSIK FHDGQDLNLA FPHHGLPDNP CNAVGALSAM ELLRSGMTMR GLSPFVTMPL
201: PEYPTGFELQ EFRAPALNFP MEAIAGGEGR EGSSGGYGAL QGVQESAGGR LLFPFEDVKP VVHTSTAAEF ENSRGHGGHP PGFWNGMIGG GGSW
001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
Arabidopsis Description
DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.