Factsheet for GSMUA_Achr7P27030_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29620_001	Banana	nucleus	56.44	64.56
GSMUA_Achr6P25190_001	Banana	nucleus	42.33	53.7
GSMUA_Achr4P16590_001	Banana	nucleus	42.02	39.94
GSMUA_Achr4P30470_001	Banana	nucleus	16.87	34.16
GSMUA_Achr7P15150_001	Banana	nucleus	16.56	29.83
HORVU2Hr1G013060.1	Barley	nucleus, plastid	26.07	28.52
GSMUA_Achr6P33410_001	Banana	nucleus	21.47	28.34
GSMUA_Achr9P03270_001	Banana	nucleus	19.02	27.93
TraesCS2A01G079200.1	Wheat	nucleus	27.3	27.3
TraesCS2D01G076600.1	Wheat	nucleus	27.3	27.13
TraesCS2B01G094000.1	Wheat	nucleus	27.3	26.97
GSMUA_Achr5P28660_001	Banana	nucleus	22.39	26.35
GSMUA_Achr5P23930_001	Banana	nucleus	15.34	25.64
GSMUA_Achr10P...	Banana	nucleus	22.39	25.17
GSMUA_Achr8P02600_001	Banana	nucleus	21.47	24.82
Zm00001d033093_P001	Maize	nucleus	27.3	24.72
EER91281	Sorghum	nucleus	29.14	24.68
GSMUA_Achr10P...	Banana	nucleus	20.25	24.26
Zm00001d013783_P001	Maize	nucleus	21.47	24.05
GSMUA_Achr3P13830_001	Banana	nucleus	19.94	23.9
GSMUA_Achr3P18260_001	Banana	nucleus	16.26	23.66
GSMUA_Achr1P17670_001	Banana	nucleus	15.64	23.5
GSMUA_Achr8P02150_001	Banana	nucleus	23.31	22.89
GSMUA_Achr8P32880_001	Banana	nucleus	17.48	22.8
GSMUA_Achr3P10670_001	Banana	nucleus	16.56	22.78
GSMUA_Achr11P...	Banana	nucleus	18.4	22.64
GSMUA_Achr1P20550_001	Banana	nucleus	18.71	22.59
GSMUA_Achr1P03930_001	Banana	nucleus	17.79	22.57
GSMUA_Achr5P19980_001	Banana	nucleus	18.4	22.56
GSMUA_Achr10P...	Banana	nucleus	17.79	22.48
GSMUA_Achr6P34180_001	Banana	nucleus	22.7	22.29
GSMUA_Achr11P...	Banana	nucleus	24.54	22.28
GSMUA_Achr5P01010_001	Banana	nucleus	17.48	22.01
GSMUA_Achr5P07290_001	Banana	nucleus	18.4	21.9
GSMUA_Achr11P...	Banana	nucleus	18.1	21.69
GSMUA_Achr5P07150_001	Banana	nucleus	21.78	21.52
GSMUA_Achr2P23020_001	Banana	nucleus	18.1	21.45
GSMUA_Achr11P...	Banana	nucleus	19.33	21.43
GSMUA_Achr9P04290_001	Banana	nucleus	19.02	21.31
GSMUA_Achr5P29110_001	Banana	nucleus	22.09	21.18
GSMUA_Achr4P27160_001	Banana	nucleus	18.1	21.07
GSMUA_Achr11P...	Banana	nucleus	19.02	20.95
GSMUA_Achr8P11850_001	Banana	nucleus	18.71	20.47
GSMUA_Achr10P...	Banana	nucleus	17.79	20.35
GSMUA_Achr10P...	Banana	nucleus	20.86	20.18
GSMUA_AchrUn_...	Banana	nucleus	17.18	20.07
GSMUA_Achr5P15160_001	Banana	nucleus	17.79	19.86
GSMUA_Achr6P19530_001	Banana	nucleus	15.03	19.84
GSMUA_Achr9P25010_001	Banana	nucleus	18.1	19.28
GSMUA_Achr9P09650_001	Banana	nucleus	17.79	19.21
GSMUA_Achr8P02840_001	Banana	nucleus	17.79	18.89
GSMUA_Achr9P11530_001	Banana	nucleus, plastid	20.86	18.78
GSMUA_Achr10P...	Banana	nucleus	16.56	18.49
GSMUA_Achr10P...	Banana	nucleus	19.63	18.39
GSMUA_Achr9P26560_001	Banana	nucleus	17.79	18.3
GSMUA_Achr8P15860_001	Banana	nucleus, plastid	19.63	17.58
GSMUA_Achr5P12010_001	Banana	nucleus	17.18	15.77
GSMUA_Achr2P09970_001	Banana	nucleus	19.63	14.81

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G27030_001	EnsemblPlants:GSMUA_Achr7P27030_001	EnsemblPlants:GSMUA_Achr7T27030_001
InterPro:IPR003851	UniProt:M0TL39	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF82	UniParc:UPI000294FE02	InterPro:Znf_Dof	SEG:seg	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_218.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G27030_001]

Coordinates

chr7:+:28204851..28206029

Molecular Weight (calculated)

35328.3 Da

IEP (calculated)

9.380

GRAVY (calculated)

-0.622

Length

326 amino acids

Sequence
(BLAST)

001: MSRAPSLASA AGKLTQLIQH LLPTSIPPLY STLPTRYLRP SHLPFPLRKK GRRATMDDES HASGGCKSTA TASELRHPEQ SLKCPRCDSS NTKFCYYNNY
101: SLAQPRHYCK TCRRYWTKGG ALRNVPVGGG CRKNKRSKSS TSRLMSSSSG TAATPMLGYN YPVSAVGVYS DTGGCSSSAG SGHTNSSIAS SIESLSSINQ
201: DLHWKLQQQR LAMFYGGQAH KDSSSTSAFP PPFLENQQDP ISFEAVERSK DEGLEGHAST KCCAGSGHHT SPPWFVESSP TMPITTITTD TTMSTMTTNN
301: GNSNTGIWNG TPWPVWNDMP QFGTLP

Best Arabidopsis Sequence Match ( AT4G38000.1 )
(BLAST)

001: MMTSSHQSNT TGFKPRRIKT TAKPPRQINN KEPSPATQPV LKCPRCDSVN TKFCYYNNYS LSQPRHYCKN CRRYWTRGGA LRNVPIGGST RNKNKPCSLQ
101: VISSPPLFSN GTSSASRELV RNHPSTAMMM MSSGGFSGYM FPLDPNFNLA SSSIESLSSF NQDLHQKLQQ QRLVTSMFLQ DSLPVNEKTV MFQNVELIPP
201: STVTTDWVFD RFATGGGATS GNHEDNDDGE GNLGNWFHNA NNNALL

Arabidopsis Description

DOF4.7Dof zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q0WQS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.