Factsheet for GSMUA_Achr1P17670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P13050_001
GSMUA_Achr2P13060_001
GSMUA_Achr4P28360_001
GSMUA_Achr4P31660_001
GSMUA_Achr5P02420_001
GSMUA_Achr5P18530_001
GSMUA_Achr7P01060_001
GSMUA_Achr8P02960_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45610.1	GSMUA_Achr5P18530_001	AT5G60690.1	21245844
AT5G60200.1	GSMUA_Achr2P13050_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr2P13060_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr4P28360_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr4P31660_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr5P02420_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr7P01060_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr8P02960_001	AT2G34710.1	21245844
AT5G60200.1	GSMUA_Achr5P18530_001	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15150_001	Banana	nucleus	23.96	28.73
GSMUA_Achr4P30470_001	Banana	nucleus	21.2	28.57
VIT_00s0652g00010.t01	Wine grape	nucleus	35.94	26.44
GSMUA_Achr5P12010_001	Banana	nucleus	42.4	25.92
KRH21495	Soybean	nucleus	31.34	24.46
KRH10827	Soybean	nucleus	30.88	23.51
KRH50000	Soybean	nucleus	34.56	22.59
GSMUA_Achr5P23930_001	Banana	nucleus	20.28	22.56
Solyc02g078620.1.1	Tomato	nucleus	29.49	22.54
KRH20497	Soybean	nucleus	34.1	22.02
PGSC0003DMT400057782	Potato	mitochondrion	28.57	21.99
GSMUA_Achr9P03270_001	Banana	nucleus	22.12	21.62
GSMUA_Achr1P03930_001	Banana	nucleus	24.42	20.62
GSMUA_Achr3P18260_001	Banana	nucleus	21.2	20.54
GSMUA_Achr3P10670_001	Banana	nucleus	22.12	20.25
GSMUA_Achr6P33410_001	Banana	nucleus	23.04	20.24
GSMUA_Achr11P...	Banana	nucleus	25.35	20.22
GSMUA_Achr10P...	Banana	nucleus	25.81	19.65
GSMUA_Achr8P32880_001	Banana	nucleus	22.58	19.6
GSMUA_Achr10P...	Banana	nucleus	24.42	19.49
GSMUA_Achr11P...	Banana	nucleus	23.5	19.25
GSMUA_Achr4P27160_001	Banana	nucleus	24.42	18.93
GSMUA_Achr11P...	Banana	nucleus	25.81	18.92
GSMUA_Achr1P20550_001	Banana	nucleus	23.5	18.89
GSMUA_Achr5P15160_001	Banana	nucleus	25.35	18.84
GSMUA_Achr5P28660_001	Banana	nucleus	23.96	18.77
Bra020261.1-P	Field mustard	nucleus	20.28	18.49
GSMUA_Achr3P13830_001	Banana	nucleus	23.04	18.38
GSMUA_Achr6P25190_001	Banana	nucleus	21.66	18.29
GSMUA_Achr10P...	Banana	nucleus	24.42	18.28
GSMUA_Achr5P01010_001	Banana	nucleus	21.66	18.15
GSMUA_Achr5P19980_001	Banana	nucleus	22.12	18.05
GSMUA_Achr10P...	Banana	nucleus	23.96	17.81
CDX71050	Canola	nucleus	20.74	17.79
GSMUA_Achr8P11850_001	Banana	nucleus	24.42	17.79
GSMUA_Achr8P02840_001	Banana	nucleus	24.88	17.59
GSMUA_AchrUn_...	Banana	nucleus	22.58	17.56
AT3G45610.1	Thale cress	nucleus	19.82	17.55
GSMUA_Achr3P29620_001	Banana	nucleus	23.04	17.54
GSMUA_Achr5P07290_001	Banana	nucleus	22.12	17.52
AT5G60200.1	Thale cress	nucleus	20.74	17.51
GSMUA_Achr10P...	Banana	nucleus	20.74	17.44
GSMUA_Achr6P19530_001	Banana	nucleus	19.82	17.41
GSMUA_Achr11P...	Banana	nucleus	23.5	17.35
GSMUA_Achr9P09650_001	Banana	nucleus	23.96	17.22
CDX80191	Canola	nucleus	20.28	17.12
CDY31568	Canola	nucleus	20.28	17.05
CDY09221	Canola	nucleus	20.28	17.05
GSMUA_Achr8P02600_001	Banana	nucleus	22.12	17.02
GSMUA_Achr5P29110_001	Banana	nucleus	26.27	16.76
GSMUA_Achr2P23020_001	Banana	nucleus	21.2	16.73
Bra002504.1-P	Field mustard	nucleus	19.82	16.67
GSMUA_Achr9P25010_001	Banana	nucleus	23.5	16.67
GSMUA_Achr8P02150_001	Banana	nucleus	25.35	16.57
GSMUA_Achr10P...	Banana	nucleus	25.35	16.32
CDX88742	Canola	nucleus	20.74	16.25
Bra006675.1-P	Field mustard	nucleus	20.28	15.88
GSMUA_Achr9P04290_001	Banana	nucleus	21.2	15.81
GSMUA_Achr9P26560_001	Banana	nucleus	23.04	15.77
GSMUA_Achr5P07150_001	Banana	nucleus	23.96	15.76
GSMUA_Achr6P34180_001	Banana	nucleus	23.96	15.66
GSMUA_Achr8P15860_001	Banana	nucleus, plastid	26.27	15.66
GSMUA_Achr7P27030_001	Banana	nucleus, plastid	23.5	15.64
GSMUA_Achr9P11530_001	Banana	nucleus, plastid	25.81	15.47
GSMUA_Achr11P...	Banana	nucleus	25.35	15.32
GSMUA_Achr10P...	Banana	nucleus	23.5	14.66
GSMUA_Achr4P16590_001	Banana	nucleus	21.66	13.7
Zm00001d029512_P001	Maize	nucleus	21.66	13.39
GSMUA_Achr2P09970_001	Banana	nucleus	25.35	12.73
Os07t0508900-00	Rice	cytosol	1.84	10.0
CDY08776	Canola	nucleus	2.3	5.81
TraesCS1B01G185700.1	Wheat	cytosol	2.76	2.76
TraesCS6A01G233700.1	Wheat	cytosol, mitochondrion, nucleus	2.76	2.76
HORVU2Hr1G047750.4	Barley	plastid	2.76	2.65
Os07t0508700-00	Rice	cytosol	0.92	1.92

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G17670_001	EnsemblPlants:GSMUA_Achr1P17670_001	EnsemblPlants:GSMUA_Achr1T17670_001
InterPro:IPR003851	UniProt:M0S0S5	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	UniParc:UPI0002960371	InterPro:Znf_Dof	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G17670_001]

Coordinates

chr1:+:13140549..13141385

Molecular Weight (calculated)

24120.1 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.633

Length

217 amino acids

Sequence
(BLAST)

001: MILLFGFVLK DADLVGGRAQ QRERQTRNAA VAALRCPRCE STNTKFCYYN NYSKLQPRHY CRACRRHWTE GGALRNVPVG GSRKNKRPRG AQTTPADASD
101: GHGNGRSIDD GSSSVFSDAS NLPIIRQPTP PEHFGAGSEE PLVSSSYHES PHPFSSLPFY DCTGQDSFTV DDRLFAMETS MLHLPASNLS HWDDIIDLVN
201: LELKPPAPDR VDHTLTY

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.