Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09221 | Canola | nucleus | 84.44 | 84.11 |
| Bra020261.1-P | Field mustard | nucleus | 77.82 | 84.03 |
| CDX71050 | Canola | nucleus | 82.49 | 83.79 |
| CDY31568 | Canola | nucleus | 81.71 | 81.4 |
| Bra002504.1-P | Field mustard | nucleus | 81.32 | 81.01 |
| CDX80191 | Canola | nucleus | 80.16 | 80.16 |
| CDX88742 | Canola | nucleus | 82.88 | 76.9 |
| Bra006675.1-P | Field mustard | nucleus | 82.49 | 76.53 |
| AT3G45610.1 | Thale cress | nucleus | 61.48 | 64.49 |
| AT4G00940.2 | Thale cress | nucleus | 28.4 | 24.83 |
| PGSC0003DMT400058729 | Potato | nucleus | 18.68 | 24.37 |
| AT2G28510.1 | Thale cress | nucleus | 26.46 | 23.61 |
| KRH50082 | Soybean | nucleus | 25.68 | 22.92 |
| AT3G52440.2 | Thale cress | nucleus | 23.35 | 22.56 |
| AT1G21340.1 | Thale cress | nucleus | 22.57 | 22.31 |
| AT3G61850.4 | Thale cress | nucleus | 27.63 | 21.91 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 17.51 | 20.74 |
| AT4G24060.1 | Thale cress | nucleus | 27.24 | 20.47 |
| AT1G64620.1 | Thale cress | nucleus | 28.02 | 20.45 |
| Zm00001d029512_P001 | Maize | nucleus | 27.63 | 20.23 |
| AT2G46590.2 | Thale cress | nucleus | 28.79 | 20.05 |
| AT5G60850.1 | Thale cress | nucleus | 23.74 | 19.87 |
| AT2G28810.1 | Thale cress | nucleus | 26.07 | 19.71 |
| AT3G55370.3 | Thale cress | nucleus | 28.02 | 19.57 |
| AT1G28310.2 | Thale cress | nucleus | 25.29 | 19.4 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 22.18 | 19.32 |
| AT5G65590.1 | Thale cress | nucleus | 23.74 | 19.3 |
| KRH20417 | Soybean | nucleus | 24.51 | 19.21 |
| AT2G37590.1 | Thale cress | nucleus | 24.51 | 19.09 |
| AT5G62940.1 | Thale cress | nucleus | 26.85 | 18.55 |
| AT1G07640.3 | Thale cress | nucleus | 23.74 | 17.99 |
| Solyc02g078620.1.1 | Tomato | nucleus | 19.84 | 17.96 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 24.51 | 17.75 |
| AT5G02460.1 | Thale cress | nucleus | 26.46 | 17.04 |
| TraesCS1B01G185700.1 | Wheat | cytosol | 5.06 | 5.99 |
| TraesCS6A01G233700.1 | Wheat | cytosol, mitochondrion, nucleus | 4.67 | 5.53 |
| HORVU2Hr1G047750.4 | Barley | plastid | 2.72 | 3.1 |
| Os03t0276300-00 | Rice | cytosol | 1.56 | 2.88 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:836142 | EMBL:AB493803 | ProteinID:AED97292.1 | EMBL:AK228185 | ArrayExpress:AT5G60200 |
| EnsemblPlantsGene:AT5G60200 | RefSeq:AT5G60200 | TAIR:AT5G60200 | RefSeq:AT5G60200-TAIR-G | EnsemblPlants:AT5G60200.1 | TAIR:AT5G60200.1 |
| EMBL:AY086054 | ProteinID:BAA97501.1 | EMBL:BT005866 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0044212 | GO:GO:0046872 | GO:GO:0048364 | InterPro:IPR003851 |
| RefSeq:NP_568920.1 | PFAM:PD007478 | PFAM:PF02701 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003015 |
| PO:PO:0004507 | PO:PO:0005417 | PO:PO:0006203 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008011 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020124 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025257 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF78 | UniProt:Q0WRV9 |
| UniProt:Q84TE9 | Symbol:TMO6 | UniParc:UPI0000060D7B | InterPro:Znf_Dof | SEG:seg | : |
Description
DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
Coordinates
chr5:+:24240810..24242523
Molecular Weight (calculated)
28202.9 Da
IEP (calculated)
8.768
GRAVY (calculated)
-0.742
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.