CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11775
KRH25015
KRH29910
KRH36781
KRH43001
KRH59117

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45610.1	KRH25015	AT5G60690.1	21245844
AT3G45610.1	KRH29910	AT5G60690.1	21245844
AT5G60200.1	KRH11775	AT2G34710.1	21245844
AT5G60200.1	KRH36781	AT2G34710.1	21245844
AT5G60200.1	KRH43001	AT2G34710.1	21245844
AT5G60200.1	KRH59117	AT2G34710.1	21245844
AT5G60200.1	KRH25015	AT5G60690.1	21245844
AT5G60200.1	KRH29910	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20417	Soybean	nucleus	83.68	73.48
KRH53547	Soybean	nucleus	23.61	33.01
KRH21403	Soybean	nucleus	32.99	29.97
KRH10904	Soybean	nucleus	32.29	29.71
KRG96269	Soybean	nucleus	16.67	27.91
KRG97209	Soybean	nucleus	23.26	26.59
KRH24943	Soybean	nucleus	28.12	26.56
Bra020261.1-P	Field mustard	nucleus	21.88	26.47
AT5G60200.1	Thale cress	nucleus	22.92	25.68
KRG92523	Soybean	nucleus	26.74	25.5
KRG89059	Soybean	nucleus	27.43	25.48
PGSC0003DMT400058729	Potato	nucleus	17.36	25.38
CDX71050	Canola	nucleus	22.22	25.3
KRH64383	Soybean	nucleus	25.69	24.92
CDY31568	Canola	nucleus	22.22	24.81
CDY09221	Canola	nucleus	22.22	24.81
KRH10402	Soybean	nucleus	24.31	24.56
AT3G45610.1	Thale cress	nucleus	20.83	24.49
Bra002504.1-P	Field mustard	nucleus	21.88	24.42
KRH10276	Soybean	nucleus	25.69	24.34
KRH06442	Soybean	nucleus	23.26	24.28
KRH22943	Soybean	nucleus	23.96	24.21
KRH23056	Soybean	nucleus	22.57	24.16
CDX80191	Canola	nucleus	21.53	24.12
KRH68931	Soybean	nucleus	24.31	23.89
KRH24808	Soybean	nucleus	25.0	23.45
KRH47883	Soybean	nucleus	23.26	23.34
KRH56758	Soybean	nucleus	23.61	23.29
KRH34272	Soybean	nucleus	27.08	23.21
CDX88742	Canola	nucleus	22.22	23.1
KRH21495	Soybean	nucleus	22.22	23.02
Bra006675.1-P	Field mustard	nucleus	21.88	22.74
KRH03180	Soybean	nucleus	23.61	22.67
KRH10827	Soybean	nucleus	21.88	22.11
KRH20416	Soybean	nucleus	27.08	22.1
KRH54755	Soybean	nucleus	22.92	21.78
KRH76935	Soybean	nucleus	25.35	21.73
KRH72174	Soybean	nucleus	21.88	21.58
KRH50083	Soybean	nucleus	26.04	21.55
KRH28526	Soybean	nucleus	25.35	21.53
KRH29808	Soybean	nucleus, plastid	25.0	21.49
KRG96256	Soybean	nucleus	19.79	21.03
KRH70477	Soybean	nucleus	27.08	21.02
KRH46814	Soybean	nucleus	26.04	20.44
KRH53419	Soybean	nucleus	20.49	20.42
KRG99864	Soybean	nucleus	25.69	20.39
KRH50000	Soybean	nucleus	23.26	20.18
KRH10907	Soybean	nucleus	24.65	20.11
KRH21402	Soybean	nucleus	24.65	19.89
KRH64521	Soybean	nucleus	19.79	19.72
KRH03289	Soybean	nucleus	22.57	19.7
KRH32857	Soybean	extracellular, vacuole	22.92	19.64
KRH20497	Soybean	nucleus	22.92	19.64
KRH39485	Soybean	nucleus	22.92	19.3
KRH74458	Soybean	nucleus	22.57	19.29
KRH63537	Soybean	nucleus	22.92	19.19
KRH57071	Soybean	nucleus	21.88	19.09
Zm00001d029512_P001	Maize	nucleus	23.26	19.09
KRH01640	Soybean	nucleus	23.96	19.01
KRH54395	Soybean	nucleus	23.26	18.98
KRH63162	Soybean	nucleus	22.22	18.77
KRH04709	Soybean	nucleus	22.92	18.75
KRG99513	Soybean	nucleus	20.83	16.26
KRH45516	Soybean	nucleus	21.18	15.14
TraesCS1B01G185700.1	Wheat	cytosol	6.94	9.22
TraesCS6A01G233700.1	Wheat	cytosol, mitochondrion, nucleus	6.6	8.76
HORVU2Hr1G047750.4	Barley	plastid	4.51	5.75
Os03t0276300-00	Rice	cytosol	2.08	4.32

Protein Annotations

EntrezGene:100814555	MapMan:15.5.1.5	EMBL:ACUP02004656	EnsemblPlantsGene:GLYMA_07G198800	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:K7L2R3	EnsemblPlants:KRH50082	ProteinID:KRH50082	ProteinID:KRH50082.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF64	UniParc:UPI00023C658B
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:36717345..36718211

Molecular Weight (calculated)

31401.6 Da

IEP (calculated)

10.718

GRAVY (calculated)

-0.757

Length

288 amino acids

Sequence
(BLAST)

001: MEQEGEKGRE ERRQVQRAAT QQPPQQHQKC PRCGSMNTKF CYFNNYSLSQ PRHFCKTCKR YWTHGGTFRN IPVGGGSRKV KRGKTNSSSF SSSSSSSSNL
101: LTQPQQNLLM RPSPPLITTM VQSTSPYYHL AGGSGYLSSL ATLHSLNNNT SQPFNQYLKV GGDFAGSSNS PLVSGFNAAY SLPPRFPQQQ SMYPAQQQQQ
201: QQQRLIPSNM ASSGAVSHSA LRTQSLINNV STSTNHRASI SDASLWSAAT VNTTSIGGNS DQNNVVKGGS SSLVPSHWLH RPGFGPPQ

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.