CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99434
KRH20417
KRH28776
KRH45585
KRH50082
KRH69639
KRH74517
KRH76680

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	KRG99434	AT1G24590.1	17376809
AT1G30490.1	KRH45585	AT1G24590.1	17376809
AT1G30490.1	KRH69639	AT1G24590.1	17376809
AT1G30490.1	KRH74517	AT1G24590.1	17376809
AT1G30490.1	KRH20417	AT3G45610.1	21245844
AT1G30490.1	KRH50082	AT3G45610.1	21245844
AT2G34710.1	KRH28776	AT2G18060.1	21245844
AT2G34710.1	KRH76680	AT2G18060.1	21245844
AT2G34710.1	KRH20417	AT3G45610.1	21245844
AT2G34710.1	KRH50082	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59117	Soybean	cytosol	92.82	92.38
KRH11775	Soybean	cytosol, nucleus, plastid	86.34	86.64
KRH36781	Soybean	cytosol, nucleus, plastid	85.04	84.74
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	83.98	84.38
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	80.57	80.38
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	80.09	79.81
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	75.74	77.01
Solyc02g069830.2.1	Tomato	nucleus	75.97	76.6
AT2G34710.1	Thale cress	cytosol	75.03	74.77
AT1G30490.1	Thale cress	nucleus	73.97	74.67
Zm00001d033246_P004	Maize	cytosol	75.27	74.65
EER91178	Sorghum	nucleus	75.03	74.59
GSMUA_Achr4P31660_001	Banana	cytosol	75.38	74.51
Zm00001d013699_P001	Maize	cytosol	74.91	74.3
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	73.5	74.29
Bra021926.1-P	Field mustard	cytosol	73.73	74.26
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	75.38	74.25
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	75.27	74.13
Os03t0640800-01	Rice	plastid	74.91	74.04
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	75.15	74.01
GSMUA_Achr2P13060_001	Banana	cytosol	7.3	73.81
GSMUA_Achr7P01060_001	Banana	cytosol	74.56	73.69
Bra005398.1-P	Field mustard	cytosol	73.5	73.5
GSMUA_Achr2P13050_001	Banana	cytosol	67.61	73.5
GSMUA_Achr5P02420_001	Banana	cytosol	75.5	73.34
GSMUA_Achr4P28360_001	Banana	cytosol	77.15	72.78
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	72.2	72.46
GSMUA_Achr8P02960_001	Banana	cytosol	71.5	72.35
Os12t0612700-01	Rice	nucleus	71.97	71.46
KRH25015	Soybean	cytosol, nucleus, plastid	69.02	69.68
HORVU5Hr1G010650.1	Barley	cytosol	70.2	69.46
KRH29910	Soybean	cytosol, nucleus, plastid	68.67	69.24
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	71.61	69.17
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	71.85	69.08
EES17386	Sorghum	mitochondrion	69.61	68.96
HORVU0Hr1G010250.3	Barley	cytosol	59.84	68.19
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	68.79	67.51
KRH58026	Soybean	cytosol	18.49	66.81
KRH62081	Soybean	cytosol	64.19	64.57
KRH52763	Soybean	cytosol	64.08	64.38
KRH47223	Soybean	nucleus	63.25	64.08
KRH44288	Soybean	nucleus	62.9	63.72
KRH47225	Soybean	cytosol	63.02	63.61
Zm00001d031061_P007	Maize	mitochondrion	66.9	63.53
HORVU5Hr1G093150.2	Barley	cytosol, plastid	75.03	63.51
KRH44292	Soybean	cytosol	62.31	62.24
KRH33388	Soybean	cytosol	7.42	60.58
Zm00001d018824_P001	Maize	cytosol	8.13	50.37
CDX71242	Canola	peroxisome	4.36	44.05
AT5G32670.1	Thale cress	cytosol, plastid	9.42	41.67
CDY53980	Canola	cytosol, nucleus, peroxisome	7.3	40.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100807637	MapMan:15.5.3.2	Gene3D:3.30.530.20	EMBL:ACUP02004841	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G124400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
UniProt:I1KSN0	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EnsemblPlants:KRH43001	ProteinID:KRH43001
ProteinID:KRH43001.1	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002338434	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:9553812..9560220

Molecular Weight (calculated)

93372.8 Da

IEP (calculated)

6.653

GRAVY (calculated)

-0.115

Length

849 amino acids

Sequence
(BLAST)

001: MALCMQRDSA SNKQQLMDCG KYVRYTPEQV EALERVYIEC PKPSSSRRQQ IIRECPLLAN IETKQIKVWF QNRRCREKQR KEASRLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSQLVYDNGF MKQQIHTASA TTTTDNSCES VVVSGQRQHQ NPKIQHPQWD ANNPAGLLAI AQETLAAFLS KATGTAVNWV QMIGMKPGPD
201: SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWY RDCRCLNVLS VIPTGNGGTI ELMYMQTYAP TTLAAARDFW TLRYTTSLED GSLVICERSL
301: TSSTGGPTGP AASNFVRAEM LPSGYLIRSC EGGGSIVHIV DHVDLDVWSV PEVLRPLYES PKFLAQKLTT AALRNVRQIA QESSGEVQYG GGRQPAVLRT
401: FSQRLCKGFN DAVNGFVDDG WSLMGNDGVE DVTIGINSSP NKFFSSHYNT SMLPAFGGGV LCAKASMLLQ NVPPALLVRF LREHRSEWAN YGVDAYSSAC
501: LKASPYAVPC ARPSGFPSSH VIIPLAHTIE HEEFLEVVRI EGNAFPPDDV ALACDMYLMQ LCSGIDENAI GACAQLVFAP IDESFADDAL LLPSGFRIIP
601: LDPKTDGPAS TRTLDLASTL ETGSGNARSA GESDLNNYNL RSVLTIAFQF TFENHLRDNV AVMARQYVRN VVRSVQRVAM AIAPSRISTQ LGPKSLPGPP
701: EALTLARWIC KSYSLHTCTE LFSVESTSGD AILKQLWHHP DAILCCSVKT NASPVFTFAN QAGLDMLETT LVALQDIMLD KVLDEAGRKF LCIEFSKIMQ
801: QGFAYLPAGI CVSSMNRPVS YEQAIAWKVL DDDDSNHCLA FVFMNWSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.