CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13458
KRH21856
KRH28782
KRH28783
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	KRH13458	AT1G53510.1	21798944
AT4G32880.1	KRH21856	AT1G53510.1	21798944
AT4G32880.1	KRH28782	AT3G51180.1	21798944
AT4G32880.1	KRH28783	AT3G51180.1	21798944
AT4G32880.1	KRH69800	AT3G51180.1	21798944
AT4G32880.1	KRH69802	AT3G51180.1	21798944
AT4G32880.1	KRH76672	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52763	Soybean	cytosol	97.51	97.4
PGSC0003DMT400074932	Potato	nucleus	54.86	87.69
VIT_04s0008g03250.t01	Wine grape	cytosol	86.02	85.41
Solyc08g066500.2.1	Tomato	cytosol	82.58	84.28
PGSC0003DMT400074934	Potato	cytosol	83.53	84.03
KRH58026	Soybean	cytosol	22.99	82.55
KRH47223	Soybean	nucleus	79.62	80.19
CDY69514	Canola	nucleus	59.72	80.0
Bra011392.1-P	Field mustard	cytosol	78.91	79.95
Bra034539.1-P	Field mustard	nucleus	78.79	79.93
KRH44288	Soybean	nucleus	79.03	79.59
AT4G32880.1	Thale cress	nucleus	78.44	79.47
CDY45021	Canola	nucleus	69.19	79.13
CDY28273	Canola	nucleus	69.19	79.13
KRH47225	Soybean	cytosol	78.32	78.6
KRH44292	Soybean	cytosol	77.49	76.94
CDX68901	Canola	plastid	18.13	75.74
KRH11775	Soybean	cytosol, nucleus, plastid	67.18	67.02
KRH36781	Soybean	cytosol, nucleus, plastid	66.71	66.08
KRH29910	Soybean	cytosol, nucleus, plastid	65.52	65.68
KRH25015	Soybean	cytosol, nucleus, plastid	64.93	65.16
KRH43001	Soybean	cytosol	64.57	64.19
KRH59117	Soybean	cytosol	64.45	63.77
KRH33388	Soybean	cytosol	5.45	44.23

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100815727	MapMan:15.5.3.2	Gene3D:3.30.530.20	EMBL:ACUP02002219	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G085000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:K7KIX6	EnsemblPlants:KRH62081	ProteinID:KRH62081
ProteinID:KRH62081.1	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF344	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002339650	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:7226748..7232993

Molecular Weight (calculated)

92746.3 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.108

Length

844 amino acids

Sequence
(BLAST)

001: MMTVSSACKD GSKVALDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM
101: EENDRLQKQV SHLVYENSFF RQQTHNNATL ATTDTNTSCE SVVTSGQRNL TPQQHPPRDA SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM PGMKPGPDSI
201: GIVAISHGCP GVAARACGLV GLEPARVAEI LKDRLSWFRD CRTVDVLNVM STGNGGTIEL LYMQLYAPTT LAPGRDFWLL RYTSLLEDGS LVVCERSLNN
301: TQNGPAMPPV QHFVRADMLA SGYLIRPCEG GGSIIHIVDH MVLEPWSVPE VLRPLYESSM LLAQRTTMAA LRHLRQISQE VSQPSVTGWG RRPAALRALS
401: QRLSKGFNEA VNGFADDGWS MLESDGIDDV TLLVNSSPSK MMGVNLGYNN NGFPSVSSSL LCAKASMLLQ NVPPAILLRF LREHRSEWAD SSIDAYSAAA
501: IKAGPCSLPG ARPGGFGGQV ILPLAHTIEH EEFMEVIKLE NMGYYRDDMN IPGDVFLLQL CSGVDEHAVG TSAELVFAPI DASFSDDAPI LPSGFRIIPL
601: DSGTDAASPN RTLDLASALE VGTTANKAAG DNSGHSGSTK SVMTIAFQFA FEVHLQENIA TMARQYVRSI IASVQRVSLA LSPSRFGSHN AFHLPPGTPE
701: AQTLARWICN SYRFYLGVEL LKCEGSESIL KSLWHHSDAV LCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD NGKKTLCTEF PQIMQQGFMC
801: IQGGICLSSM GRPVSYERAV AWKVLNEEES AHCICFMFIN WSFV

Best Arabidopsis Sequence Match ( AT4G32880.1 )
(BLAST)

001: MGGGSNNSHN MDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPCWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHFDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVTG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSILESDGID DVTLLVNSSP TKMMMTSSLP FANGYTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDVGSRTAGD SCGSRGNSKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGL RPPPASPEAH TLARWISHSY
701: RCYLGVDLLK PHGTDLLKSL WHHPDAVMCC SLKALSPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN GKKTLSSEFP QIMQQGFMCM DGGICMSSMG
801: RAVTYEKAVG WKVLNDDEDP HCICFMFLNW SFI

Arabidopsis Description

ATHB-8Homeobox-leucine zipper protein ATHB-8 [Source:UniProtKB/Swiss-Prot;Acc:Q39123]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.