CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRG97711
KRH11775
KRH14933
KRH31163
KRH36781
KRH43001
KRH56614
KRH59117
KRH72037
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	KRH11775	AT2G34710.1	21798944
AT3G51180.1	KRH36781	AT2G34710.1	21798944
AT3G51180.1	KRH43001	AT2G34710.1	21798944
AT3G51180.1	KRH59117	AT2G34710.1	21798944
AT3G51180.1	KRG97711	AT3G08530.1	21798944
AT3G51180.1	KRH14933	AT3G08530.1	21798944
AT3G51180.1	KRH31163	AT3G08530.1	21798944
AT3G51180.1	KRH73205	AT3G08530.1	21798944
AT3G51180.1	KRG93305	AT3G27960.1	21798944
AT3G51180.1	KRH56614	AT3G27960.1	21798944
AT3G51180.1	KRH72037	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76672	Soybean	nucleus	44.83	56.81
KRH69802	Soybean	mitochondrion	42.39	36.73
KRH69800	Soybean	plastid	40.97	36.4
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	27.99	33.91
Bra012068.1-P	Field mustard	cytosol	11.56	31.67
KRH61063	Soybean	nucleus	26.77	30.7
Solyc02g084080.1.1	Tomato	cytosol	7.51	29.84
AT5G66270.1	Thale cress	cytosol	26.98	29.62
KRH28783	Soybean	nucleus	20.69	29.23
CDY45225	Canola	cytosol, nucleus, plastid	23.73	28.61
Solyc02g038790.1.1	Tomato	cytosol	11.56	28.36
Zm00001d001952_P001	Maize	mitochondrion	25.76	28.1
EES13033	Sorghum	mitochondrion	25.36	27.78
GSMUA_Achr1P19920_001	Banana	cytosol	24.95	27.58
CDY67080	Canola	cytosol, nucleus, plastid	21.5	26.77
CDX77980	Canola	mitochondrion, nucleus, plastid	25.56	26.69
CDX73744	Canola	mitochondrion, nucleus	26.77	26.45
GSMUA_Achr3P11230_001	Banana	cytosol	23.73	25.27
AT3G51180.1	Thale cress	nucleus	26.57	25.14
Zm00001d026536_P002	Maize	nucleus	23.94	24.69
Bra036832.1-P	Field mustard	nucleus	24.54	24.4
HORVU2Hr1G109820.1	Barley	mitochondrion	25.56	23.86
TraesCS2B01G520300.1	Wheat	mitochondrion	25.76	23.74
VIT_04s0023g03180.t01	Wine grape	cytosol	34.28	23.74
Solyc02g084160.1.1	Tomato	cytosol	7.51	23.27
TraesCS2D01G492400.1	Wheat	mitochondrion	25.76	22.92
TraesCS2A01G492200.1	Wheat	mitochondrion	25.76	22.88
Solyc02g084110.1.1	Tomato	cytosol	6.69	21.71
Solyc02g084200.1.1	Tomato	nucleus	25.15	20.88
PGSC0003DMT400009146	Potato	nucleus	25.56	20.83
Os04t0663200-01	Rice	cytosol	16.43	20.61
HORVU2Hr1G109740.2	Barley	plastid	25.56	20.39
PGSC0003DMT400092162	Potato	nucleus	21.1	18.54
PGSC0003DMT400009142	Potato	plasma membrane	17.65	16.11

Protein Annotations

EMBL:ACUP02006765	EnsemblPlants:KRH28782	EnsemblPlantsGene:GLYMA_11G075800	EntrezGene:102661234	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF5	PFscan:PS50103
ProteinID:KRH28782	ProteinID:KRH28782.1	SEG:seg	UniParc:UPI0003DE9692	UniProt:A0A0R0HDF5	MapMan:15.5.16

Description

hypothetical protein

Coordinates

chr11:+:5670457..5674105

Molecular Weight (calculated)

54069.4 Da

IEP (calculated)

9.590

GRAVY (calculated)

-0.584

Length

493 amino acids

Sequence
(BLAST)

001: MKRSRKLKKV SWAPGSNLCQ VKLFLSEDLP SKVGEKFQDH FQAKKMSIGS SDDFPPGFED NHLRNQSKAK LSHIPQIKWE CPSLFTLSND WRVAAGEDST
101: ETCDQKLREM RVPEAIYPRI SAIPDGPSES EKEFYDDNES LIPLIPLIPV EEEEESAEDI EPDSSIKKLH KQNSQQQYIP PAISLVNPEC SNVNSHCSGK
201: PLGATSSEAD IIAAASSAAV ASIIKRNEQG TLIDMDLLVK LFTDPTMIEK LIEQNRTATT TVSVSAPSSI LSIPTSYSKP AAVASETTPT TTRPSITSVP
301: SVSLPKPVPP QTVTRHKPPS IPTPHMHRPV KKNIPHMANR VLPSLNTHSP QQGLKRAAPS LASVSSSELK TVTVSSASAN MHAVEKQVQS TTTGAVKDVN
401: YYLNLVKEHG THKQAGNKSL KNLQGLKPSQ GEVKFKSKKP CIYFRTKRGC RNGSDCPYQH DMSNRGEAGK VLMAQQNAKR LKVGPEIKGR LYT

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.