Factsheet for Bra012068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45225	Canola	cytosol, nucleus, plastid	78.89	34.72
Solyc02g084080.1.1	Tomato	cytosol	17.22	25.0
Solyc02g038790.1.1	Tomato	cytosol	23.89	21.39
AT5G66270.1	Thale cress	cytosol	46.67	18.71
Bra036832.1-P	Field mustard	nucleus	46.67	16.94
KRH28783	Soybean	nucleus	29.44	15.19
Solyc02g084160.1.1	Tomato	cytosol	12.78	14.47
Bra025776.1-P	Field mustard	extracellular	31.11	13.97
Bra016491.1-P	Field mustard	nucleus	30.56	13.85
GSMUA_Achr3P11230_001	Banana	cytosol	31.67	12.31
GSMUA_Achr1P19920_001	Banana	cytosol	30.0	12.11
Os04t0663200-01	Rice	cytosol	26.11	11.96
TraesCS2B01G520300.1	Wheat	mitochondrion	34.44	11.59
KRH28782	Soybean	cytosol, nucleus, plastid	31.67	11.56
EES13033	Sorghum	mitochondrion	28.89	11.56
HORVU2Hr1G109820.1	Barley	mitochondrion	33.89	11.55
KRH69800	Soybean	plastid	34.44	11.17
Zm00001d026536_P002	Maize	nucleus	29.44	11.09
Zm00001d001952_P001	Maize	mitochondrion	27.78	11.06
TraesCS2D01G492400.1	Wheat	mitochondrion	33.89	11.01
TraesCS2A01G492200.1	Wheat	mitochondrion	33.89	10.99
KRH69802	Soybean	mitochondrion	34.44	10.9
Solyc02g084110.1.1	Tomato	cytosol	8.89	10.53
PGSC0003DMT400009146	Potato	nucleus	35.0	10.41
Solyc02g084200.1.1	Tomato	nucleus	33.89	10.27
PGSC0003DMT400009142	Potato	plasma membrane	30.56	10.19
HORVU2Hr1G109740.2	Barley	plastid	33.89	9.87
PGSC0003DMT400092162	Potato	nucleus	30.0	9.63
VIT_04s0023g03180.t01	Wine grape	cytosol	33.89	8.57
KRH76672	Soybean	nucleus	18.33	8.48

Protein Annotations

EnsemblPlants:Bra012068.1	EnsemblPlants:Bra012068.1-P	EnsemblPlantsGene:Bra012068	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	SEG:seg
UniParc:UPI0002541844	UniProt:M4D6F9	MapMan:15.5.16	:	:	:

Description

AT5G66270 (E=1e-026) | zinc finger (CCCH-type) family protein

Coordinates

chrA07:-:10211117..10212855

Molecular Weight (calculated)

19564.3 Da

IEP (calculated)

5.591

GRAVY (calculated)

-0.207

Length

180 amino acids

Sequence
(BLAST)

001: MFKTEDYPAK VGAQTCRKSK ASKDPHHGTV YSTSTRPPNI TLITWKLPPK FILNEHLLVA SGEESTETGS ENLRIAKVLE AFYPHRSLIH SRPFISPTAV
101: QVDDTNTPTI RVTPIEDDED QPALQSSIAP PSVFGLGPDL SLTALSALLN TKEQGSLVDA GLLVKVLTDP TIINNLECCC

Best Arabidopsis Sequence Match ( AT5G66270.1 )
(BLAST)

001: MMKKTKKGRV SWASDSMLCQ VKLFLSDDCP VKVASNLPPG FEATDYATKR IISHIPRIKW KRPPLFVLDD ALLVGSGGKS IETRSENLRI SKVLEAFYPH
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS

Arabidopsis Description

Zinc finger CCCH domain-containing protein 68 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.