Factsheet for VIT_04s0023g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0252g00130.t01
VIT_03s0017g00210.t01
VIT_06s0004g05530.t01
VIT_10s0003g04670.t01
VIT_14s0066g01280.t01
VIT_16s0115g00130.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	VIT_06s0004g05530.t01	AT2G29400.1	21798944
AT3G51180.1	VIT_10s0003g04670.t01	AT2G34710.1	21798944
AT3G51180.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT3G51180.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT3G51180.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT3G51180.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT3G51180.1	VIT_00s0252g00130.t01	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g13880.t01	Wine grape	nucleus	25.56	39.82
KRH28782	Soybean	cytosol, nucleus, plastid	23.74	34.28
Bra012068.1-P	Field mustard	cytosol	8.57	33.89
KRH69802	Soybean	mitochondrion	26.4	33.04
KRH69800	Soybean	plastid	25.56	32.79
GSMUA_Achr1P19920_001	Banana	cytosol	19.24	30.72
KRH28783	Soybean	nucleus	15.03	30.66
KRH76672	Soybean	nucleus	16.15	29.56
Solyc02g084080.1.1	Tomato	cytosol	5.06	29.03
EES13033	Sorghum	mitochondrion	18.12	28.67
AT5G66270.1	Thale cress	cytosol	17.7	28.06
Zm00001d001952_P001	Maize	mitochondrion	17.7	27.88
Solyc02g038790.1.1	Tomato	cytosol	7.87	27.86
GSMUA_Achr3P11230_001	Banana	cytosol	17.56	27.0
CDY45225	Canola	cytosol, nucleus, plastid	15.45	26.89
TraesCS2B01G520300.1	Wheat	mitochondrion	19.8	26.36
HORVU2Hr1G109820.1	Barley	mitochondrion	19.52	26.33
CDX73744	Canola	mitochondrion, nucleus	18.12	25.85
TraesCS2A01G492200.1	Wheat	mitochondrion	20.08	25.77
TraesCS2D01G492400.1	Wheat	mitochondrion	19.8	25.45
CDX77980	Canola	mitochondrion, nucleus, plastid	16.85	25.42
CDY67080	Canola	cytosol, nucleus, plastid	13.9	25.0
Zm00001d026536_P002	Maize	nucleus	16.57	24.69
AT3G51180.1	Thale cress	nucleus	17.42	23.8
Bra036832.1-P	Field mustard	nucleus	16.57	23.79
Os04t0663200-01	Rice	cytosol	13.06	23.66
HORVU2Hr1G109740.2	Barley	plastid	19.38	22.33
Solyc02g084200.1.1	Tomato	nucleus	18.26	21.89
PGSC0003DMT400009146	Potato	nucleus	18.54	21.82
Solyc02g084110.1.1	Tomato	cytosol	4.35	20.39
Solyc02g084160.1.1	Tomato	cytosol	4.49	20.13
PGSC0003DMT400092162	Potato	nucleus	14.89	18.89
PGSC0003DMT400009142	Potato	plasma membrane	14.04	18.52

Protein Annotations

ArrayExpress:VIT_04s0023g03180	EMBL:FN594959	EnsemblPlants:VIT_04s0023g03180.t01	EnsemblPlantsGene:VIT_04s0023g03180	EntrezGene:104879131	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2
PFscan:PS50103	ProteinID:CCB44374	ProteinID:CCB44374.1	RefSeq:XP_010649053.1	SEG:seg	UniParc:UPI0002108F6D
UniProt:F6GWN9	MapMan:15.5.16	:	:	:	:

Description

No Description!

Coordinates

chr4:+:19732143..19742203

Molecular Weight (calculated)

77651.2 Da

IEP (calculated)

8.830

GRAVY (calculated)

-0.426

Length

712 amino acids

Sequence
(BLAST)

001: MKLSKSSKKV SWAPDANLCQ AKLFRSKDCP SQVCLKARDG LLAKKSWILH SDGRDTNGLP HGFKDTRVNQ SKKKVSHIPK IKWKCPPKFV LSSNWLVASG
101: EESQEAEAQK LRENHVVEAV YPRISAIPLS PSISLDIEEC HQDDCDIPLV PITSMEDEGT VDTLFDLAAP INSSMISKPP ALSQDLLASG NTSQCNRPVL
201: EPPAIEKTAL GLSPDVEADI IAAATAAITM VMRCKEQGSL IDTDLLIKIL TNPKMTEKLI NDCREPGGTS TIPFSESKPV TQLVTVSCSE PAMVLEPRPA
301: NENMCYQPKR VRPALDSRSP QEDTFPVSRS KQVAHRVPLP HTNGNMCSLP GDKRPALNSS PLQPDNFPIS CSKPVTLPKP ESGNIYPLPN GMLPDSNSRL
401: SIPNTVTVSL SPAPLPSKGP NMVLLSQPAK VNLCSIPNDV QPAINLRPPQ ADAVQFSRSK PANGNMYSLV DEVLAAASNS RPPQLDTVPV SSSKPVSLSV
501: PVLPSIEVDM VATQKAANEN FYPLWSGSGS TVSTRYSREP MVPLSGFNPA PLLVRSSVLE PRVLSPRPTN GNLHNILKGV QPTLNTTPTL PDILPTSSFK
601: AIKSHVKDVN YYKSLVKQHG GEKQGTQDQI IPQYANHENY LQGMELIQNF KPTELKPKSQ KSCIFYNSPT GCRNGTNCPY QHDTFSQLRC GSMLEDKRAK
701: RMKLDGKITG RK

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.