Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012068.1-P | Field mustard | cytosol | 18.71 | 46.67 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 36.97 | 40.59 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 35.19 | 39.9 |
| AT3G51180.1 | Thale cress | nucleus | 40.98 | 35.32 |
| Solyc02g084080.1.1 | Tomato | cytosol | 8.46 | 30.65 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 29.62 | 26.98 |
| AT1G19860.2 | Thale cress | nucleus | 24.05 | 26.02 |
| Solyc02g038790.1.1 | Tomato | cytosol | 11.58 | 25.87 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 24.72 | 24.89 |
| KRH69800 | Soybean | plastid | 30.51 | 24.68 |
| KRH69802 | Soybean | mitochondrion | 30.73 | 24.25 |
| KRH28783 | Soybean | nucleus | 18.26 | 23.5 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 24.05 | 23.33 |
| KRH76672 | Soybean | nucleus | 19.38 | 22.36 |
| EES13033 | Sorghum | mitochondrion | 22.27 | 22.22 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 25.84 | 21.97 |
| Zm00001d001952_P001 | Maize | mitochondrion | 22.05 | 21.9 |
| Os04t0663200-01 | Rice | cytosol | 18.04 | 20.61 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 24.5 | 20.56 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 24.72 | 20.0 |
| Zm00001d026536_P002 | Maize | nucleus | 21.16 | 19.87 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 24.28 | 19.68 |
| HORVU2Hr1G109740.2 | Barley | plastid | 26.06 | 18.93 |
| Solyc02g084160.1.1 | Tomato | cytosol | 6.68 | 18.87 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 28.06 | 17.7 |
| Solyc02g084200.1.1 | Tomato | nucleus | 23.16 | 17.51 |
| PGSC0003DMT400009146 | Potato | nucleus | 23.16 | 17.19 |
| Solyc02g084110.1.1 | Tomato | cytosol | 5.57 | 16.45 |
| PGSC0003DMT400092162 | Potato | nucleus | 20.49 | 16.4 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 17.37 | 14.44 |
Protein Annotations
| MapMan:15.5.16 | EntrezGene:836759 | ProteinID:AED98193.1 | EMBL:AK117637 | ArrayExpress:AT5G66270 | EnsemblPlantsGene:AT5G66270 |
| RefSeq:AT5G66270 | TAIR:AT5G66270 | RefSeq:AT5G66270-TAIR-G | EnsemblPlants:AT5G66270.1 | TAIR:AT5G66270.1 | Unigene:At.28874 |
| ProteinID:BAB10706.1 | EMBL:BT005171 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0046872 | InterPro:IPR000571 | RefSeq:NP_201428.1 | PO:PO:0009025 |
| PFscan:PS50103 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | UniProt:Q9FH61 | UniParc:UPI000000C56A | InterPro:Znf_CCCH |
| SEG:seg | : | : | : | : | : |
Description
Zinc finger CCCH domain-containing protein 68 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH61]
Coordinates
chr5:-:26473086..26475839
Molecular Weight (calculated)
49445.1 Da
IEP (calculated)
9.250
GRAVY (calculated)
-0.530
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKKTKKGRV SWASDSMLCQ VKLFLSDDCP VKVASNLPPG FEATDYATKR IISHIPRIKW KRPPLFVLDD ALLVGSGGKS IETRSENLRI SKVLEAFYPH
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.