Factsheet for HORVU2Hr1G109740.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010250.3
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU3Hr1G055550.3
HORVU4Hr1G024710.4
HORVU4Hr1G026030.9
HORVU4Hr1G060490.1
HORVU4Hr1G060530.1
HORVU5Hr1G010650.1
HORVU5Hr1G043650.2
HORVU5Hr1G048010.1
HORVU5Hr1G093150.2
HORVU6Hr1G069310.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT3G51180.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT3G51180.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT3G51180.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT3G51180.1	HORVU4Hr1G060490.1	AT2G29400.1	21798944
AT3G51180.1	HORVU4Hr1G060530.1	AT2G29400.1	21798944
AT3G51180.1	HORVU0Hr1G010250.3	AT2G34710.1	21798944
AT3G51180.1	HORVU5Hr1G010650.1	AT2G34710.1	21798944
AT3G51180.1	HORVU5Hr1G093150.2	AT2G34710.1	21798944
AT3G51180.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT3G51180.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944
AT3G51180.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT3G51180.1	HORVU0Hr1G021800.1	AT4G01090.1	21798944
AT3G51180.1	HORVU1Hr1G092980.14	AT4G01090.1	21798944
AT3G51180.1	HORVU3Hr1G055550.3	AT4G01090.1	21798944
AT3G51180.1	HORVU7Hr1G082720.10	AT4G01090.1	21798944
AT3G51180.1	HORVU4Hr1G026030.9	AT5G04170.1	21798944
AT3G51180.1	HORVU5Hr1G043650.2	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G109820.1	Barley	mitochondrion	80.26	93.94
TraesCS2B01G520300.1	Wheat	mitochondrion	69.9	80.75
TraesCS2A01G492200.1	Wheat	mitochondrion	70.06	78.02
TraesCS2D01G492400.1	Wheat	mitochondrion	69.9	77.98
EES13033	Sorghum	mitochondrion	40.94	56.22
Zm00001d001952_P001	Maize	mitochondrion	40.29	55.09
Zm00001d026536_P002	Maize	nucleus	38.84	50.21
Os04t0663200-01	Rice	cytosol	31.07	48.85
GSMUA_Achr1P19920_001	Banana	cytosol	29.45	40.81
VIT_18s0001g13880.t01	Wine grape	nucleus	29.77	40.26
GSMUA_Achr3P11230_001	Banana	cytosol	27.83	37.15
CDY62587	Canola	mitochondrion, nucleus	24.43	37.01
Bra016491.1-P	Field mustard	nucleus	23.62	36.78
Bra025776.1-P	Field mustard	extracellular	23.79	36.66
CDY29391	Canola	extracellular	23.62	36.41
AT1G19860.2	Thale cress	nucleus	24.43	36.39
CDY39347	Canola	mitochondrion	24.6	36.1
CDX83740	Canola	nucleus	22.98	35.86
KRH61063	Soybean	nucleus	24.6	35.35
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	23.14	35.14
Solyc12g089260.1.1	Tomato	nucleus	27.18	34.43
PGSC0003DMT400075650	Potato	nucleus	27.18	34.36
Bra012068.1-P	Field mustard	cytosol	9.87	33.89
Solyc02g084080.1.1	Tomato	cytosol	5.83	29.03
KRH28783	Soybean	nucleus	16.34	28.94
KRH69800	Soybean	plastid	24.11	26.85
AT5G66270.1	Thale cress	cytosol	18.93	26.06
KRH69802	Soybean	mitochondrion	23.79	25.83
KRH28782	Soybean	cytosol, nucleus, plastid	20.39	25.56
CDY67080	Canola	cytosol, nucleus, plastid	15.53	24.24
AT3G51180.1	Thale cress	nucleus	19.74	23.42
Solyc02g038790.1.1	Tomato	cytosol	7.61	23.38
CDY45225	Canola	cytosol, nucleus, plastid	15.21	22.98
CDX77980	Canola	mitochondrion, nucleus, plastid	16.99	22.25
CDX73744	Canola	mitochondrion, nucleus	17.8	22.04
Bra036832.1-P	Field mustard	nucleus	16.99	21.17
KRH76672	Soybean	nucleus	13.27	21.08
Solyc02g084160.1.1	Tomato	cytosol	5.02	19.5
VIT_04s0023g03180.t01	Wine grape	cytosol	22.33	19.38
PGSC0003DMT400009146	Potato	nucleus	18.12	18.51
Solyc02g084200.1.1	Tomato	nucleus	17.15	17.85
PGSC0003DMT400092162	Potato	nucleus	13.75	15.15
PGSC0003DMT400009142	Potato	plasma membrane	11.81	13.52
Solyc02g084110.1.1	Tomato	cytosol	3.07	12.5

Protein Annotations

EnsemblPlants:HORVU2Hr1G109740.2	EnsemblPlantsGene:HORVU2Hr1G109740	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	SEG:seg	UniParc:UPI000B46C8FC
UniProt:A0A287JEP0	MapMan:15.5.16	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:717866248..717871619

Molecular Weight (calculated)

62462.7 Da

IEP (calculated)

8.864

GRAVY (calculated)

-0.606

Length

618 amino acids

Sequence
(BLAST)

001: SGADASHHIL LLASSPPPVS SPPPLPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PALPCRCKRA SRLVSSRSDS IRCVAGGVAT MGSRRSRRVS
101: WATGPSLCKV RLFISEDSPS QAGLRPQDNL QAKGSTSLMH AAGSSSDDSL PPGFESLQPA NDLKIDISQI PIIRWKCPPH ILLNPEWQVA SGKESREIPV
201: QNERMFGVLE AIYPRASNIP PNPFVSLDVK DAHYDDSETP LIPVIPVEDD DASDQSEGPM VDPPNDYHQS NDAPLASNAS VTAAQQHPHG STGVEPDVLA
301: AASAAYTAIM QSNQKGSMVD RDLLVKILSD PVQVERLMKE YNQIRQKQSA SSSVVAPMPR GPPPQMTMSA PASYSNHMTT FQNTNSTLPP PPQMAPRPMM
401: NRLPQGYPPV PMNHPPGSSP AINLRPGSSP AMSRPQGPSP VMSRPQGPSP VMSRPPGPNP AMSHPPGSNP ATSNPPGSNP AMSHPPGSNL AMSYPPGSSS
501: PAMNFSGAPP RAINYYKTLI HQHGGERQES LEQHGRQFGM YPQSAPPQTS GIDAMNGASV TNRDMKTRPT RPCAYFNGPR GCRNGANCTF LHDSSPPSRQ
601: QENDSKRLKL DSRIAGRN

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.