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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • cytosol 1
PPI

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G153500.1 Wheat golgi, unclear 94.29 99.53
TraesCS5B01G152300.1 Wheat unclear 94.18 99.41
TraesCS5D01G158800.1 Wheat plastid 94.18 99.41
EES07849 Sorghum plastid 91.9 96.96
KXG22761 Sorghum plastid 91.79 96.78
Os11t0104900-00 Rice plasma membrane 37.44 96.57
Zm00001d044614_P086 Maize plastid 91.63 96.44
Zm00001d023218_P064 Maize plastid 91.29 95.75
HORVU4Hr1G024710.4 Barley plastid 93.4 94.55
Zm00001d005090_P106 Maize plastid 90.68 94.02
Os12t0104766-00 Rice plasma membrane 29.89 93.25
Os11t0104866-00 Rice plasma membrane 29.84 93.08
Zm00001d052308_P046 Maize cytosol, plastid 88.91 92.07
VIT_06s0004g06860.t01 Wine grape cytosol, plastid 86.19 91.14
GSMUA_Achr5P08520_001 Banana plastid 86.02 90.81
GSMUA_Achr4P16770_001 Banana cytosol 86.52 90.75
KRG97711 Soybean endoplasmic reticulum, nucleus 85.47 90.65
Solyc06g051310.2.1 Tomato nucleus 85.41 90.53
VIT_13s0067g01290.t01 Wine grape extracellular 85.47 90.43
KRH31163 Soybean endoplasmic reticulum 85.19 90.35
GSMUA_AchrUn_... Banana plasma membrane 67.89 90.07
Solyc05g052510.2.1 Tomato nucleus, plastid 85.19 90.04
KRH14933 Soybean nucleus 84.86 90.0
KRH73205 Soybean nucleus 85.19 89.98
CDY36318 Canola cytosol 36.66 89.81
GSMUA_Achr4P18860_001 Banana cytosol 80.64 89.81
AT3G11130.1 Thale cress cytosol, plasma membrane 84.69 89.56
AT3G08530.1 Thale cress cytosol, plasma membrane, plastid 84.53 89.49
Os12t0104800-01 Rice cytosol 6.05 89.34
CDY00997 Canola extracellular 84.47 89.22
CDY36301 Canola cytosol 83.08 89.17
Solyc03g096000.2.1 Tomato nucleus 84.14 89.13
CDY00724 Canola cytosol 83.03 89.11
CDY07954 Canola cytosol 82.7 89.01
KRH28591 Soybean endoplasmic reticulum 84.03 89.01
KRH76885 Soybean endoplasmic reticulum 83.97 88.95
Bra034864.1-P Field mustard cytosol 73.32 88.84
CDX73889 Canola cytosol 82.92 88.83
Bra034166.1-P Field mustard cytosol 71.27 88.74
CDX74011 Canola cytosol 82.58 88.74
KRH17059 Soybean endoplasmic reticulum, nucleus 83.75 88.67
KRH72708 Soybean endoplasmic reticulum, mitochondrion 83.86 88.63
CDY22158 Canola cytosol 9.32 88.42
CDY08549 Canola cytosol 75.54 88.16
GSMUA_AchrUn_... Banana plasma membrane 82.64 87.39
Bra001286.1-P Field mustard cytosol 71.6 86.99
GSMUA_Achr5P14240_001 Banana cytosol, plasma membrane, plastid 83.69 86.57
Bra001391.1-P Field mustard cytosol 69.11 85.81
CDY27997 Canola cytosol 74.04 83.44
Bra029698.1-P Field mustard cytosol 67.83 82.69
CDY35984 Canola cytosol 73.6 82.63
KRH12961 Soybean cytosol 4.22 79.17
CDY36317 Canola cytosol 10.98 78.26
KRH25762 Soybean cytosol 4.05 76.04
CDY22157 Canola cytosol 3.22 74.36
VIT_03s0017g00210.t01 Wine grape cytosol, extracellular 1.77 60.38
VIT_16s0115g00130.t01 Wine grape cytosol 3.72 57.76
VIT_19s0027g01340.t01 Wine grape cytosol 8.1 47.56
CDY06504 Canola extracellular, mitochondrion 2.0 38.3
Protein Annotations
Gene3D:1.25.40.10Gene3D:1.25.40.730Gene3D:2.130.10.110MapMan:22.1.1.1UniProt:A0A287R3H9InterPro:ARM-type_fold
InterPro:Clathrin_H-chain/VPS_repeatInterPro:Clathrin_H-chain_NInterPro:Clathrin_H-chain_linker_coreInterPro:Clathrin_H-chain_propeller_rptInterPro:Clathrin_heavy_chainncoils:Coil
GO:GO:0003674GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0005886GO:GO:0005905GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016192
GO:GO:0030130GO:GO:0030132GO:GO:0030659GO:GO:0031410GO:GO:0032051GO:GO:0048268
GO:GO:0071439EnsemblPlantsGene:HORVU5Hr1G048010EnsemblPlants:HORVU5Hr1G048010.1InterPro:IPR000547InterPro:IPR011990InterPro:IPR016025
PFAM:PF00637PFAM:PF01394PFAM:PF09268PFAM:PF13838PIRSF:PIRSF002290PFscan:PS50236
PANTHER:PTHR10292PANTHER:PTHR10292:SF1SMART:SM00299SUPFAM:SSF48371SUPFAM:SSF50989InterPro:TPR-like_helical_dom_sf
UniParc:UPI000B482AA6SEG:seg::::
Description
Clathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:A0A287R3H9]
Coordinates
chrchr5H:+:372531985..372543299
Molecular Weight (calculated)
203994.0 Da
IEP (calculated)
5.172
GRAVY (calculated)
-0.162
Length
1803 amino acids
Sequence
(BLAST)
0001: QMCKRLPTDT PLLKIPPIFS APLVPPPPVL RSDPISRSLA RTGRARRRTT DPPPLPSDCV LSPPPSAAMA AANAPIAMRE ALTLTSLGIA PQFITFTHVT
0101: MESDRYICVR ETSPQNSVVI IDMAMPSQPL RRPITADSAL MNPNTRILAL KAQIPGTTQD HLQIFNIEAK TKIKSHQMPE QVVFWKWITP KLLGLVTQAS
0201: VYHWSIEGDS EPTKMFDRTA NLANNQIINY RCDPAEKWLV LIGIAPGAPE RPQLVKGNMQ LFSVDQQRSQ ALEAHAASFA TFKVPGNENP STLICFASKA
0301: SNAGTLTSKL HIIELGAQPG KPGFSKKQAD LFFPPDFQDD FPVAMQISQK YGLVYVITKL GLLFVYDLET AAAVYRNRIS PDPIFLTAES STTGGFYAIN
0401: RRGQVLHATV NDATVVPFVS GQLNNLELAV NLAKRANLPG AENLVVQRFQ ELFAQTKYKE AAELAAESPQ GLLRTPETVA KFQSVPVQAG QTPPLLQYFG
0501: TLLTRGKLNA YESLELSRLV VNQNKKNLLE NWLAEDKLEC SEELGDLVKT VDNDLALKIY IKARATPKVV AAFAERREFD KILIYSKQVG YTPDYLFLLQ
0601: TILRTDPQGA VNFALMMSQM EGGCPLDYNT ITDLFLQRNM IREATAFLLD VLKPNLEEHA FLQTKVLEIN LVTYPNVADA ILANGMFSHY DRPRIAQLCE
0701: KAGLYLRALQ VSIFAWLQFW FFLFGSLSNY SYTATQHYAE LPDIKRVIVN THAIEPQALV EFFGTLSKEW ALECMKDLLL VNLRGNLQIV VQAAKEYCEQ
0801: LGVDACIKLF EQFKSYEGLY FFLGSYLSSS EDPDIHFKYI ESAARTGQIK EVERVTRESN FYDAEKTKNF LMEAKLPDAR PLINVCDRFG FVPDLTHYLY
0901: TNNMLRYIEG YVQKVNPGNA PLVVGQLLDD ECPEDFIKGL ILSVRSLLPV EPLVDECEKR NRLRLLTQFL EHLVSEGTQD VHVHNALGKI IIDSNNNPEH
1001: FLTTNPFYDS RVVGKYCEKR DPTLAVVAYR RGQCDEELIN VTNKNSLFKL QARYVVERMD GDLWDKVLQP DNEYRRQFID QVVSTALPES KSPEQVSAAV
1101: KAFMTADLPH ELIELLEKIV LQNSAFSGNF NLQNLLILTA IKADSSRVMD YVNRLDNFDG PAVGEVAVEA QLYEEAFAIF KKFNLNVQAV DVLLDNIRSI
1201: ERAEEFAFRV EEDAVWSQVA KAQLREGLVS EAIESFIRAD DVTHFLDVIR AAEEANVYHD LVKYLLMVRQ KAREPKVDSE LIFAYAKIDR LNDIEEFILM
1301: PNVANLQNVG DRLYDEELYE AAKIIYAFIS NWAKLAVTLV KLKQFQGAVD AARKANSAKT WKEVCFACVD AEEFRLAQIC GLNIIVQVDD LEEVSEYYQN
1401: RGCFSELISL MESGLGLERA HMGIFTELGV LYARYRPEKL MEHIKLFSTR LNIPKLIRAC DEQLHWKELT YLYIQYDEFD NAATTIMNHS PDAWDHMQFK
1501: DVCVKVANVE IYYKAVHFYL QEHPDLINDL LNVLALRLDH TRVVDIMRKA GQLHLVKPYM VAVQSNNVSA VNEALNELYV EEEDYERLRE SVDMHDNFDQ
1601: IGLAQKLEKH ELLEMRRIAA YIYKKAGRWK QSIALSKKDN MYKDCMETCS QSGDRELSED LLVYFIEQGK KECFASCLFI CYDLIRADVA LELAWTNNML
1701: DFAFPYLLQF IREYTSKVDD LVKDRIESQK EEKAKDNEEK ELVAQQNMYA QLLPLALPAP PGMMGGPPPP MGGMGMPPMG GMGMPPMGPG PMPAYGMPPM
1801: GSY
Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)
0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
Arabidopsis Description
CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.