Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 5
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
unclear: 26455813 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g051310.2.1 | Tomato | nucleus | 96.0 | 96.06 |
| Solyc05g052510.2.1 | Tomato | nucleus, plastid | 95.42 | 95.19 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 93.01 | 93.12 |
| KRH31163 | Soybean | endoplasmic reticulum | 92.77 | 92.88 |
| KRH14933 | Soybean | nucleus | 92.13 | 92.24 |
| KRH73205 | Soybean | nucleus | 92.36 | 92.09 |
| AT3G11130.1 | Thale cress | cytosol, plasma membrane | 91.48 | 91.32 |
| AT3G08530.1 | Thale cress | cytosol, plasma membrane, plastid | 90.95 | 90.9 |
| Bra034864.1-P | Field mustard | cytosol | 79.02 | 90.39 |
| EES07849 | Sorghum | plastid | 90.6 | 90.23 |
| Bra034166.1-P | Field mustard | cytosol | 76.73 | 90.19 |
| KXG22761 | Sorghum | plastid | 90.54 | 90.12 |
| CDY22158 | Canola | cytosol | 9.99 | 89.47 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 89.48 | 89.17 |
| TraesCS5D01G158800.1 | Wheat | plastid | 89.42 | 89.11 |
| TraesCS5B01G152300.1 | Wheat | unclear | 89.42 | 89.11 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 89.54 | 88.86 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 89.48 | 88.8 |
| Bra001286.1-P | Field mustard | cytosol | 77.38 | 88.75 |
| Os11t0104900-00 | Rice | plasma membrane | 36.43 | 88.7 |
| Bra001391.1-P | Field mustard | cytosol | 75.15 | 88.09 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 89.37 | 87.82 |
| Os12t0104766-00 | Rice | plasma membrane | 29.2 | 85.99 |
| Os11t0104866-00 | Rice | plasma membrane | 29.08 | 85.64 |
| HORVU4Hr1G024710.4 | Barley | plastid | 89.31 | 85.35 |
| HORVU5Hr1G048010.1 | Barley | plastid | 89.13 | 84.14 |
| Bra029698.1-P | Field mustard | cytosol | 72.74 | 83.71 |
| CDY22157 | Canola | cytosol | 3.58 | 78.21 |
| Os12t0104800-01 | Rice | cytosol | 5.17 | 72.13 |
| Zm00001d021067_P001 | Maize | cytosol, mitochondrion | 18.57 | 71.33 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 4.0 | 58.62 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 1.7 | 54.72 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 8.52 | 47.23 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | InterPro:Clathrin_H-chain/VPS_repeat |
| InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt | InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 |
| InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 | UniProt:K4BJ22 | PFAM:PF00637 | PFAM:PF01394 |
| PFAM:PF09268 | PFAM:PF13838 | PIRSF:PIRSF002290 | PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 |
| SMART:SM00299 | SUPFAM:SSF48371 | SUPFAM:SSF50989 | EnsemblPlantsGene:Solyc03g096000.2 | EnsemblPlants:Solyc03g096000.2.1 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0002767BE9 | SEG:seg | : | : | : | : |
Description
Clathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:K4BJ22]
Coordinates
chr3:-:57795742..57809958
Molecular Weight (calculated)
193088.0 Da
IEP (calculated)
5.034
GRAVY (calculated)
-0.168
Length
1702 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAATAPIIM KETLTLPSAG VNQQFINFTN VTMESEKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS AIMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKQKIKSYQM PEQVVFWKWI TPQILGIVTQ TSVYHWPIEG DTEPIKMFDR TANLANNQII NYRCDPSEKW LVLIGIAPGS PERPQLVKGN MQLYSVDQQR
0201: SQSLEAHAAS FASFRVPGSD RDSILISFAT KSLNAGQVIS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVSMQIS HKYSLIYVIT KLGLLFVYDL
0301: ETATAVYRNR ISPDPIFLTA EASSIGGFYA INRRGQVLLA TVNETTIIPF VSGQLNNLEL AVNLAKRGNL PGAETLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTSDT VAKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NMIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRIAQL CEKAGLYIRA LQHYTELPDI KRVIVNTHAI EPQALVEFFG TVSREWALEC MKDLLVINIK GNLQIIVQVA
0701: KEYCEQLGVD ACIKLFEQFK SYDGLYFFLG SYLSSSEDPE IHFKYVEAAA KTGQIKEVER VTRESNFYDP EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPANAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV DECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQSRY VVERMDGDLW EKVLNPENEF RRQLIDQVVS TALPESKSPE
1001: QVSATVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PARVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQGVNVLL
1101: DNIHDINRAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLDVIRAAED ADVYHDLVKY LLMVRQKTKE PKVDSELIYA YAKIDRLSDI
1201: EEFILMPNVA NLPNVGDRLY DEALYEAAKI IFAFTSNWAK LAITLVKLNQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IVQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRHEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TVMNHSPDAW
1401: DHMQFKDIAV KVANVELYYK AVHFYLQEHP DLINDLLNVL ALRVDHTRVV DIMRKAGHLR LVKPYMIAVQ SNNVSSVNEA LNEIYVEEED YDRLRESVDL
1501: HDNFDQIGLA QKIEKHELLE MRRVAAYIYK RAGRWKQSIA LSKKDNLYKD AMETASQSGD RELAEELLVY FIEQGKKECF ASCLFVCYDL IRPDVALELA
1601: WMNNMIDFAF PYLLQFIREY TGKVDELIKD KIEAQSEAKA KENEEKDVMK QQNMYAQLLP LALPAPPMPG MGGGFGPSQP PPMGGMGMPP MPPFGMPPMG
1701: PY
0101: AKQKIKSYQM PEQVVFWKWI TPQILGIVTQ TSVYHWPIEG DTEPIKMFDR TANLANNQII NYRCDPSEKW LVLIGIAPGS PERPQLVKGN MQLYSVDQQR
0201: SQSLEAHAAS FASFRVPGSD RDSILISFAT KSLNAGQVIS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVSMQIS HKYSLIYVIT KLGLLFVYDL
0301: ETATAVYRNR ISPDPIFLTA EASSIGGFYA INRRGQVLLA TVNETTIIPF VSGQLNNLEL AVNLAKRGNL PGAETLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTSDT VAKFQSVPVQ AGQTPPLLQY FGTLLTKGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NMIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRIAQL CEKAGLYIRA LQHYTELPDI KRVIVNTHAI EPQALVEFFG TVSREWALEC MKDLLVINIK GNLQIIVQVA
0701: KEYCEQLGVD ACIKLFEQFK SYDGLYFFLG SYLSSSEDPE IHFKYVEAAA KTGQIKEVER VTRESNFYDP EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPANAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV DECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQSRY VVERMDGDLW EKVLNPENEF RRQLIDQVVS TALPESKSPE
1001: QVSATVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PARVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQGVNVLL
1101: DNIHDINRAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLDVIRAAED ADVYHDLVKY LLMVRQKTKE PKVDSELIYA YAKIDRLSDI
1201: EEFILMPNVA NLPNVGDRLY DEALYEAAKI IFAFTSNWAK LAITLVKLNQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IVQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRHEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TVMNHSPDAW
1401: DHMQFKDIAV KVANVELYYK AVHFYLQEHP DLINDLLNVL ALRVDHTRVV DIMRKAGHLR LVKPYMIAVQ SNNVSSVNEA LNEIYVEEED YDRLRESVDL
1501: HDNFDQIGLA QKIEKHELLE MRRVAAYIYK RAGRWKQSIA LSKKDNLYKD AMETASQSGD RELAEELLVY FIEQGKKECF ASCLFVCYDL IRPDVALELA
1601: WMNNMIDFAF PYLLQFIREY TGKVDELIKD KIEAQSEAKA KENEEKDVMK QQNMYAQLLP LALPAPPMPG MGGGFGPSQP PPMGGMGMPP MPPFGMPPMG
1701: PY
0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
Arabidopsis Description
CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.