Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034166.1-P | Field mustard | cytosol | 95.83 | 98.48 |
| Bra001391.1-P | Field mustard | cytosol | 93.08 | 95.39 |
| Bra001286.1-P | Field mustard | cytosol | 92.54 | 92.79 |
| CDY08549 | Canola | cytosol | 92.61 | 89.19 |
| Os12t0104766-00 | Rice | plasma membrane | 34.21 | 88.06 |
| Os11t0104900-00 | Rice | plasma membrane | 41.13 | 87.55 |
| Os11t0104866-00 | Rice | plasma membrane | 33.94 | 87.37 |
| CDY00997 | Canola | extracellular | 98.92 | 86.23 |
| Bra029698.1-P | Field mustard | cytosol | 85.69 | 86.21 |
| AT3G11130.1 | Thale cress | cytosol, plasma membrane | 97.92 | 85.45 |
| Solyc05g052510.2.1 | Tomato | nucleus, plastid | 92.2 | 80.42 |
| Solyc06g051310.2.1 | Tomato | nucleus | 91.53 | 80.07 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 91.06 | 79.71 |
| KRH31163 | Soybean | endoplasmic reticulum | 91.06 | 79.71 |
| KRH73205 | Soybean | nucleus | 91.4 | 79.67 |
| KRH14933 | Soybean | nucleus | 90.86 | 79.53 |
| Solyc03g096000.2.1 | Tomato | nucleus | 90.39 | 79.02 |
| KXG22761 | Sorghum | plastid | 90.26 | 78.54 |
| EES07849 | Sorghum | plastid | 90.12 | 78.47 |
| TraesCS5D01G158800.1 | Wheat | plastid | 89.18 | 77.69 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 89.11 | 77.63 |
| TraesCS5B01G152300.1 | Wheat | unclear | 89.11 | 77.63 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 89.38 | 77.55 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 89.18 | 77.38 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 89.31 | 76.73 |
| HORVU4Hr1G024710.4 | Barley | plastid | 89.25 | 74.56 |
| HORVU5Hr1G048010.1 | Barley | plastid | 88.84 | 73.32 |
| Os12t0104800-01 | Rice | cytosol | 5.71 | 69.67 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 2.35 | 66.04 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 4.64 | 59.48 |
| Zm00001d021067_P001 | Maize | cytosol, mitochondrion | 15.12 | 50.79 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 9.74 | 47.23 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra034864 |
| EnsemblPlants:Bra034864.1 | EnsemblPlants:Bra034864.1-P | InterPro:Clathrin_H-chain/VPS_repeat | InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt |
| InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 |
| UniProt:M4F1B8 | PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 | PFAM:PF13838 | PIRSF:PIRSF002290 |
| PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 | SUPFAM:SSF48371 | SUPFAM:SSF50989 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000254774C | SEG:seg | : | : | : |
Description
AT3G11130 (E=0.0) | clathrin heavy chain, putative
Coordinates
chrA05:+:21789317..21797624
Molecular Weight (calculated)
168200.0 Da
IEP (calculated)
4.989
GRAVY (calculated)
-0.153
Length
1488 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVSFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVLGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFSKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KVGYTPDYMF LLQTILRTDP
0501: QGAVNFALMM SQMEGGCPVD YNTITDLFLQ RNLIREATAF LLDVLEPNLP EHAFLQTKVL EINLVTFPNV ADAILANGMF SHYDRPRVAQ LCEKAGLYIQ
0601: SLKHYSELPD IKRVIVNTHA IEPQDPEIHF KYIEAAAKTG QIKEVERVTR ESNFYDAEKT KNFLMEAKLP DARPLINVCD RFGFVPDLTH YLYTNNMLRY
0701: IEGYVQKVNP GNAPLVVGQL LDDECPEDFI KGLILSVRSL LPVEPLVDEC EKRNRLRLLT QFLEHLVSEG SQDVHVHNAL EQVSAAVKAF MTADLPHELI
0801: ELLEKIVLQN SAFSGNFNLQ NLLILTAIKA DPSRVMDYIN RLDNFDGPAV GDVAVDAQLY EEAFAIFKKF NLNVQAVNVL LDNVRSIERA VEFAFRVEED
0901: SVWSQVAKAQ LRDGLVSDAI ESFIRADDAT HFLEVIRATE DANVYDDLVK YLLMVRQKVK EPKVDSELIY AYAKIERLGE IEEFILMPNV ANLQQVGDRL
1001: YDEALYEAAK IIYAFISNWG KLAVTLVKLQ QFQGAVDAAR KANSAKTWKE VCFACVDAEE FRLAQICGLN IIIQVDDLEE VSEYYQNRGC FNELISLMES
1101: GLGLERAHMG IFTELGVLYA RYRYEKLMEH IKLFSTRLNI PKLIRACDEQ QHWQELTYLY IQYDEFDNAA TTVMNHSPEA WEHMQFKDIV AKVANVELYY
1201: KAVHFYLQEH PDIINDLLNV LALRLDHTRV VDIMRKAGQL RLIKPYMVAV QSNNVSAVNE ALNEIYVEEE DYDRLRESID LHDSFDQIGL AQKIEKHELV
1301: EMRRVAAYIY KKAGRWKQSI ALSKKDNMYK DCMETASQSG DHDLAEQLLV YFIEQGKKEC FATCLFVCYD LIRPDVALEH AWINNMLDFA FPYLLQFIRE
1401: YSGKVDELIK DKLEAQKEVK AKEQEEKDVM SQQNMYAQLL PLALPAPPMP GMGGGPGMGG GYGPPPQMGG MPGMPPMPPY GMPPMGGY
0101: AKAKLKSHQM PEQVSFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVLGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFSKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KVGYTPDYMF LLQTILRTDP
0501: QGAVNFALMM SQMEGGCPVD YNTITDLFLQ RNLIREATAF LLDVLEPNLP EHAFLQTKVL EINLVTFPNV ADAILANGMF SHYDRPRVAQ LCEKAGLYIQ
0601: SLKHYSELPD IKRVIVNTHA IEPQDPEIHF KYIEAAAKTG QIKEVERVTR ESNFYDAEKT KNFLMEAKLP DARPLINVCD RFGFVPDLTH YLYTNNMLRY
0701: IEGYVQKVNP GNAPLVVGQL LDDECPEDFI KGLILSVRSL LPVEPLVDEC EKRNRLRLLT QFLEHLVSEG SQDVHVHNAL EQVSAAVKAF MTADLPHELI
0801: ELLEKIVLQN SAFSGNFNLQ NLLILTAIKA DPSRVMDYIN RLDNFDGPAV GDVAVDAQLY EEAFAIFKKF NLNVQAVNVL LDNVRSIERA VEFAFRVEED
0901: SVWSQVAKAQ LRDGLVSDAI ESFIRADDAT HFLEVIRATE DANVYDDLVK YLLMVRQKVK EPKVDSELIY AYAKIERLGE IEEFILMPNV ANLQQVGDRL
1001: YDEALYEAAK IIYAFISNWG KLAVTLVKLQ QFQGAVDAAR KANSAKTWKE VCFACVDAEE FRLAQICGLN IIIQVDDLEE VSEYYQNRGC FNELISLMES
1101: GLGLERAHMG IFTELGVLYA RYRYEKLMEH IKLFSTRLNI PKLIRACDEQ QHWQELTYLY IQYDEFDNAA TTVMNHSPEA WEHMQFKDIV AKVANVELYY
1201: KAVHFYLQEH PDIINDLLNV LALRLDHTRV VDIMRKAGQL RLIKPYMVAV QSNNVSAVNE ALNEIYVEEE DYDRLRESID LHDSFDQIGL AQKIEKHELV
1301: EMRRVAAYIY KKAGRWKQSI ALSKKDNMYK DCMETASQSG DHDLAEQLLV YFIEQGKKEC FATCLFVCYD LIRPDVALEH AWINNMLDFA FPYLLQFIRE
1401: YSGKVDELIK DKLEAQKEVK AKEQEEKDVM SQQNMYAQLL PLALPAPPMP GMGGGPGMGG GYGPPPQMGG MPGMPPMPPY GMPPMGGY
0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY
Arabidopsis Description
CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.