Factsheet for Bra036500.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31939	Canola	nucleus	84.76	89.9
GSMUA_Achr9P23720_001	Banana	nucleus	35.24	39.78
GSMUA_Achr1P17650_001	Banana	nucleus	31.9	37.85
Bra008989.1-P	Field mustard	nucleus	30.0	33.33
Bra031138.1-P	Field mustard	nucleus	49.05	32.59
TraesCSU01G218200.1	Wheat	nucleus	30.0	30.29
GSMUA_Achr2P18530_001	Banana	cytosol	13.81	29.59
AT2G20760.1	Thale cress	nucleus	46.67	28.99
Bra017039.1-P	Field mustard	nucleus	31.43	28.45
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	38.57	26.91
Bra000163.1-P	Field mustard	nucleus	33.81	26.89
Zm00001d014898_P001	Maize	plasma membrane	36.19	26.76
Os06t0731800-01	Rice	nucleus, plasma membrane	36.67	26.46
TraesCS2D01G564200.1	Wheat	nucleus	38.57	26.13
EER89016	Sorghum	nucleus	35.24	25.96
Bra033472.1-P	Field mustard	nucleus	30.95	25.9
TraesCSU01G101000.3	Wheat	nucleus	38.1	25.81
TraesCS2B01G594200.1	Wheat	nucleus	37.62	25.48
TraesCS2A01G590000.2	Wheat	nucleus	37.14	25.08
GSMUA_Achr3P14280_001	Banana	nucleus	33.81	24.83
KRH26934	Soybean	nucleus	38.1	24.77
KRH22403	Soybean	nucleus	38.57	24.7
EES11661	Sorghum	nucleus	35.24	24.58
Zm00001d001814_P001	Maize	nucleus	34.76	24.41
GSMUA_Achr11P...	Banana	nucleus	37.14	24.3
Zm00001d026630_P001	Maize	plasma membrane	35.24	24.26
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	39.52	23.99
GSMUA_Achr5P20770_001	Banana	cytosol	36.19	23.82
GSMUA_Achr4P26100_001	Banana	nucleus	36.67	22.06
GSMUA_AchrUn_...	Banana	nucleus	37.14	21.14
HORVU7Hr1G119590.1	Barley	nucleus, plastid	36.19	20.99
GSMUA_Achr8P11240_001	Banana	nucleus	37.62	20.05
Solyc07g054180.2.1	Tomato	nucleus	38.57	19.47
PGSC0003DMT400047261	Potato	extracellular	38.1	18.35

Protein Annotations

MapMan:22.1.1.2	EnsemblPlantsGene:Bra036500	EnsemblPlants:Bra036500.1	EnsemblPlants:Bra036500.1-P	InterPro:Clathrin_L-chain	GO:GO:0003674
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	UniProt:M4F5Z1	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI0002540E51
SEG:seg	:	:	:	:	:

Description

AT2G20760 (E=1e-021) | protein binding / structural molecule

Coordinates

chrA07:+:53366..54465

Molecular Weight (calculated)

24165.6 Da

IEP (calculated)

10.653

GRAVY (calculated)

-1.390

Length

210 amino acids

Sequence
(BLAST)

001: MASFDEGDFP AQTTHSPSQP DNFFMSDHNI SEAHPPPSTQ HSLNRDGDGD DDFGSENNPA SPNHANGNDD ALFASDGPFL RLEWRWRRKR KRRRCAIKKA
101: FYEKREKTIE TKKADNRERE KSELISREVP NIDKKRGKND PDKKPSMIVI QGPKPGKPTD LGRMRQIFLK LKTNPPPHMM PPPPPAKMPK TENLQRKQRG
201: QKKNMLHLKQ

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.