Factsheet for PGSC0003DMT400047261

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054180.2.1	Tomato	nucleus	84.63	88.7
GSMUA_Achr9P23720_001	Banana	nucleus	26.38	61.83
GSMUA_Achr1P17650_001	Banana	nucleus	24.31	59.89
CDX81980	Canola	nucleus	37.61	51.41
TraesCSU01G218200.1	Wheat	nucleus	24.31	50.96
GSMUA_Achr2P18530_001	Banana	cytosol	11.24	50.0
EER89016	Sorghum	nucleus	32.11	49.12
Bra031138.1-P	Field mustard	nucleus	35.55	49.05
CDY13859	Canola	nucleus	35.55	49.05
KRH22403	Soybean	nucleus	36.01	47.87
Os06t0731800-01	Rice	nucleus, plasma membrane	31.88	47.77
KRH26934	Soybean	nucleus	35.32	47.68
Zm00001d014898_P001	Maize	plasma membrane	30.96	47.54
AT2G20760.1	Thale cress	nucleus	36.24	46.75
GSMUA_Achr3P14280_001	Banana	nucleus	30.28	46.15
PGSC0003DMT400033344	Potato	nucleus	32.57	45.81
EES11661	Sorghum	nucleus	31.19	45.18
Zm00001d001814_P001	Maize	nucleus	30.96	45.15
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	30.96	44.85
GSMUA_Achr11P...	Banana	nucleus	32.8	44.55
PGSC0003DMT400021919	Potato	mitochondrion	23.85	44.07
PGSC0003DMT400057639	Potato	nucleus	33.03	43.64
GSMUA_Achr5P20770_001	Banana	cytosol	31.88	43.57
Zm00001d026630_P001	Maize	plasma membrane	30.05	42.95
CDY31939	Canola	nucleus	19.27	42.42
GSMUA_Achr4P26100_001	Banana	nucleus	33.95	42.41
TraesCSU01G101000.3	Wheat	nucleus	30.05	42.26
TraesCS2A01G590000.2	Wheat	nucleus	29.13	40.84
TraesCS2D01G564200.1	Wheat	nucleus	28.21	39.68
TraesCS2B01G594200.1	Wheat	nucleus	27.98	39.35
GSMUA_AchrUn_...	Banana	nucleus	33.03	39.02
Bra036500.1-P	Field mustard	nucleus	18.35	38.1
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	29.36	36.99
HORVU7Hr1G119590.1	Barley	nucleus, plastid	29.82	35.91
GSMUA_Achr8P11240_001	Banana	nucleus	31.42	34.77
CDY05790	Canola	nucleus	12.84	33.33

Protein Annotations

EntrezGene:102591939	MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0072583
UniProt:M1BKE6	PFAM:PF01086	EnsemblPlantsGene:PGSC0003DMG400018349	PGSC:PGSC0003DMG400018349	EnsemblPlants:PGSC0003DMT400047261	PANTHER:PTHR10639
PANTHER:PTHR10639:SF8	UniParc:UPI00029651B9	RefSeq:XP_006357556.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018349]

Coordinates

chr7:+:48976892..48980821

Molecular Weight (calculated)

48221.2 Da

IEP (calculated)

4.995

GRAVY (calculated)

-1.290

Length

436 amino acids

Sequence
(BLAST)

001: MENFEQTYAD GTEEIPSTAS PFDDHNYDGF DHSQRYEFDV TSADDGGDVP PPMPSDIDEL SAGEQQHYYH DNMQSPENSG FAPSPNREYQ GSPFHETLEG
101: NQGSDVQSKP YDLGADTDGL FSSGTDGPLL PDPTEMREEG AAFREWRRQN AIYLEEKEKK EKEMRNQIIA EAEEYIRAFY EKRTLNCEST KANNRERERL
201: YLANQEKFHK EAHKQYFKAI AEIIPREVPN IEKRRGKKEE EKKPSVSVIQ GPKPGKPTDL SRMRQLFLKL KQNPPPHMLP PPEKDKDGKD GKEGKDAKDG
301: KVAKDGKEGK DAKDGKDTKE TKVGKDAKNE KISTPKEAKD GKNEKIATPK ASKDAKNEKS PKGKAANDIK NEENAAQQGS PAAAIDKDIS SVKDADTAQQ
401: GSPAAASVGT PKESKVDTPT TVADGKVAES DSTSTA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.