Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 74.92 | 74.45 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 42.01 | 72.04 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 37.62 | 67.8 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 18.81 | 61.22 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 65.52 | 59.89 |
| TraesCSU01G218200.1 | Wheat | nucleus | 38.24 | 58.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.52 | 56.64 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 50.47 | 56.29 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 50.78 | 55.67 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 68.34 | 55.33 |
| EER89016 | Sorghum | nucleus | 47.96 | 53.68 |
| Zm00001d014898_P001 | Maize | plasma membrane | 46.4 | 52.11 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 48.28 | 51.16 |
| TraesCSU01G101000.3 | Wheat | nucleus | 47.96 | 49.35 |
| KRH21478 | Soybean | nucleus | 47.96 | 48.88 |
| KRH10839 | Soybean | nucleus | 49.22 | 48.76 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 47.02 | 48.39 |
| EES11661 | Sorghum | nucleus | 45.45 | 48.17 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 46.08 | 47.42 |
| KRH50011 | Soybean | nucleus | 46.08 | 47.42 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 46.08 | 47.27 |
| KRH20480 | Soybean | endoplasmic reticulum | 44.83 | 47.19 |
| Zm00001d001814_P001 | Maize | nucleus | 43.89 | 46.82 |
| PGSC0003DMT400033344 | Potato | nucleus | 45.14 | 46.45 |
| Solyc03g006510.2.1 | Tomato | plastid | 44.2 | 46.23 |
| CDX81980 | Canola | nucleus | 45.77 | 45.77 |
| Solyc02g078540.2.1 | Tomato | nucleus | 46.71 | 45.29 |
| Zm00001d026630_P001 | Maize | plasma membrane | 43.26 | 45.25 |
| CDY13859 | Canola | nucleus | 44.51 | 44.94 |
| Bra031138.1-P | Field mustard | nucleus | 44.51 | 44.94 |
| PGSC0003DMT400057639 | Potato | nucleus | 46.4 | 44.85 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 52.66 | 44.8 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 45.77 | 42.2 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 47.65 | 41.99 |
| AT2G20760.1 | Thale cress | nucleus | 43.26 | 40.83 |
| KRH22403 | Soybean | nucleus | 40.75 | 39.63 |
| KRH26934 | Soybean | nucleus | 40.13 | 39.63 |
| CDY31939 | Canola | nucleus | 24.45 | 39.39 |
| Bra036500.1-P | Field mustard | nucleus | 23.82 | 36.19 |
| Solyc07g054180.2.1 | Tomato | nucleus | 44.83 | 34.38 |
| CDY05790 | Canola | nucleus | 17.87 | 33.93 |
| PGSC0003DMT400047261 | Potato | extracellular | 43.57 | 31.88 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSMUA_Achr5G20770_001 | EnsemblPlants:GSMUA_Achr5P20770_001 | EnsemblPlants:GSMUA_Achr5T20770_001 |
| UniProt:M0T0A6 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF20 | UniParc:UPI0002959490 | SEG:seg |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G20770_001]
Coordinates
chr5:-:22654224..22659714
Molecular Weight (calculated)
34930.9 Da
IEP (calculated)
6.536
GRAVY (calculated)
-0.775
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAFETFSN DGDEAAAAAV AGSATNRPFD DGYLGYDPRL PSQRFDAFST FSPADDVHPA VDHFPPASPG FPGYGFSSST SPFTMPQANG ATYGVEENGE
101: IFTSDAPILP DPEQMQRDEG FILREWRRQN AVLLEEKERK EKELRNEIIS EAEEYKQAFY EKRKLNCETS KLQNREKETL YLANQEKFHA NADKQYWKAI
201: AELIPHEIAN IEKRGKKDKD KKPSIVVIQG PKPGKPTDLS RMRQILVKLK HTPPPHMKPP TPPVATPAKD AKDGAAAEGK KPAPPAKNAK ANGAAAVTKV
301: DTATAEGQAV KAPEVVATA
101: IFTSDAPILP DPEQMQRDEG FILREWRRQN AVLLEEKERK EKELRNEIIS EAEEYKQAFY EKRKLNCETS KLQNREKETL YLANQEKFHA NADKQYWKAI
201: AELIPHEIAN IEKRGKKDKD KKPSIVVIQG PKPGKPTDLS RMRQILVKLK HTPPPHMKPP TPPVATPAKD AKDGAAAEGK KPAPPAKNAK ANGAAAVTKV
301: DTATAEGQAV KAPEVVATA
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
Arabidopsis Description
Clathrin light chain 3 [Source:UniProtKB/Swiss-Prot;Acc:F4J5M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.