Factsheet for TraesCSU01G218200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G101000.3	Wheat	nucleus	90.87	60.97
GSMUA_Achr9P23720_001	Banana	nucleus	52.4	58.6
GSMUA_Achr1P17650_001	Banana	nucleus	49.52	58.19
Os06t0731800-01	Rice	nucleus, plasma membrane	73.56	52.58
EER89016	Sorghum	nucleus	70.67	51.58
Zm00001d014898_P001	Maize	plasma membrane	70.19	51.41
GSMUA_Achr2P18530_001	Banana	cytosol	23.56	50.0
HORVU7Hr1G119590.1	Barley	nucleus, plastid	86.54	49.72
GSMUA_Achr5P20770_001	Banana	cytosol	58.65	38.24
GSMUA_Achr3P14280_001	Banana	nucleus	50.96	37.06
KRH21478	Soybean	nucleus	55.77	37.06
GSMUA_Achr11P...	Banana	nucleus	56.25	36.45
KRH10839	Soybean	nucleus	56.25	36.34
KRH50011	Soybean	nucleus	53.37	35.81
KRH20480	Soybean	endoplasmic reticulum	51.92	35.64
Solyc02g078540.2.1	Tomato	nucleus	54.81	34.65
PGSC0003DMT400033344	Potato	nucleus	51.44	34.52
CDY13859	Canola	nucleus	52.4	34.49
Bra031138.1-P	Field mustard	nucleus	52.4	34.49
CDX81980	Canola	nucleus	52.88	34.48
Solyc03g006510.2.1	Tomato	plastid	50.48	34.43
PGSC0003DMT400057639	Potato	nucleus	54.33	34.24
GSMUA_Achr4P26100_001	Banana	nucleus	57.21	34.1
GSMUA_AchrUn_...	Banana	nucleus	57.69	32.52
CDY31939	Canola	nucleus	30.29	31.82
AT2G20760.1	Thale cress	nucleus	49.04	30.18
VIT_00s0370g00020.t01	Wine grape	nucleus	54.33	30.13
KRH26934	Soybean	nucleus	46.63	30.03
Bra036500.1-P	Field mustard	nucleus	30.29	30.0
CDY05790	Canola	nucleus	24.04	29.76
KRH22403	Soybean	nucleus	46.15	29.27
GSMUA_Achr8P11240_001	Banana	nucleus	52.88	27.92
Solyc07g054180.2.1	Tomato	nucleus	51.44	25.72
PGSC0003DMT400047261	Potato	extracellular	50.96	24.31

Protein Annotations

EnsemblPlants:TraesCSU01G218200.1	EnsemblPlantsGene:TraesCSU01G218200	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	InterPro:Clathrin_L-chain
PANTHER:PTHR10639	PANTHER:PTHR10639:SF20	SEG:seg	MapMan:22.1.1.2	:	:

Description

No Description!

Coordinates

chrUn:+:321699681..321700745

Molecular Weight (calculated)

22315.9 Da

IEP (calculated)

10.330

GRAVY (calculated)

-0.760

Length

208 amino acids

Sequence
(BLAST)

001: MLTPALNSQN ALLLEEKEKH EKELRSQIIL EAEEFKKGFV EKRKLNLETS KDHNREREKL FLSNQEKFHK GADKQYWKAI SELIPQEIAH IEKRTGKKDK
101: DKKPGIIVVQ GPKPGKATDM ARMRQILSKL KHTPPPHMKP PPPPAAAPAG KDGTPAAAGK DGAKAVATPA AKDAPANGTV PEKENAAPAA AAPAAAAPAP
201: PAEPIAAA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.