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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH50011 Soybean nucleus 80.2 78.39
GSMUA_Achr9P23720_001 Banana nucleus 39.27 63.98
GSMUA_Achr1P17650_001 Banana nucleus 37.29 63.84
KRH21478 Soybean nucleus 65.35 63.26
KRH10839 Soybean nucleus 66.34 62.42
GSMUA_Achr2P18530_001 Banana cytosol 18.15 56.12
TraesCSU01G218200.1 Wheat nucleus 35.64 51.92
Os06t0731800-01 Rice nucleus, plasma membrane 48.84 50.86
KRH75865 Soybean plastid 42.57 49.62
Zm00001d014898_P001 Maize plasma membrane 46.2 49.3
EER89016 Sorghum nucleus 45.87 48.77
Solyc02g078540.2.1 Tomato nucleus 52.48 48.33
GSMUA_Achr3P14280_001 Banana nucleus 45.54 48.25
Solyc03g006510.2.1 Tomato plastid 48.51 48.2
PGSC0003DMT400033344 Potato nucleus 49.17 48.06
PGSC0003DMT400057639 Potato nucleus 52.15 47.88
Os04t0679100-01 Rice extracellular, plasma membrane, plastid 46.2 46.51
EES11661 Sorghum nucleus 45.21 45.51
VIT_00s0370g00020.t01 Wine grape nucleus 56.11 45.33
TraesCSU01G101000.3 Wheat nucleus 45.87 44.84
GSMUA_Achr5P20770_001 Banana cytosol 47.19 44.83
GSMUA_Achr11P... Banana nucleus 47.19 44.55
Zm00001d001814_P001 Maize nucleus 43.89 44.48
Zm00001d026630_P001 Maize plasma membrane 43.89 43.61
KRH22403 Soybean nucleus 46.86 43.29
KRH26934 Soybean nucleus 45.87 43.03
TraesCS2B01G594200.1 Wheat nucleus 43.89 42.9
TraesCS2D01G564200.1 Wheat nucleus 43.56 42.58
TraesCS2A01G590000.2 Wheat nucleus 43.56 42.44
GSMUA_Achr4P26100_001 Banana nucleus 48.84 42.41
HORVU2Hr1G118930.1 Barley cytosol, mitochondrion, nucleus 44.22 38.73
GSMUA_AchrUn_... Banana nucleus 46.2 37.94
HORVU7Hr1G119590.1 Barley nucleus, plastid 44.55 37.29
GSMUA_Achr8P11240_001 Banana nucleus 47.52 36.55
Protein Annotations
EntrezGene:100788673MapMan:22.1.1.2EMBL:ACUP02008266InterPro:Clathrin_L-chainncoils:CoilEnsemblPlantsGene:GLYMA_13G181500
GO:GO:0003674GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0005886GO:GO:0005905GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0016020GO:GO:0016192GO:GO:0030125GO:GO:0030130
GO:GO:0030132GO:GO:0030659GO:GO:0031410GO:GO:0032050GO:GO:0072583UniProt:I1M0C6
EnsemblPlants:KRH20480ProteinID:KRH20480ProteinID:KRH20480.1PFAM:PF01086PANTHER:PTHR10639PANTHER:PTHR10639:SF8
UniParc:UPI0001BA8A75SEG:seg::::
Description
hypothetical protein
Coordinates
chr13:-:29472110..29474654
Molecular Weight (calculated)
33561.0 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.959
Length
303 amino acids
Sequence
(BLAST)
001: MASTFDAFTV DDDHFAAPAA ADTFSGYPDF SSFPSDDVPV DYADTAASPE IFGFSDPGPV YSQSPFEQVH ENGNGNGTEN GYGDGVFVSN GPVLPPPGEM
101: EPEEGYVLRE WRRQNVIQLE EKEKREKEMR LKIIEEAEEY KVAFYEKRKL NVETNKVQNK EREKLYLANQ EKFHKEADKN YWKAIGEIIP REVPNIEKKR
201: SKKDQENKPS ITVVQGPKPG KPTDLSRLRQ ILLKLKHTPP AHMIPPPPAP AKDAKDGKDG KETASKANGA APASQPKDAT TNNAATDLPQ KEAPPAPVEQ
301: SST
Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.