Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G218200.1 | Wheat | nucleus | 60.97 | 90.87 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 67.74 | 72.16 |
| Zm00001d014898_P001 | Maize | plasma membrane | 62.9 | 68.66 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 78.71 | 67.4 |
| EER89016 | Sorghum | nucleus | 61.29 | 66.67 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 39.03 | 65.05 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 36.45 | 63.84 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 16.13 | 51.02 |
| GSMUA_Achr11P... | Banana | nucleus | 50.32 | 48.6 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 49.35 | 47.96 |
| KRH21478 | Soybean | nucleus | 47.1 | 46.65 |
| PGSC0003DMT400033344 | Potato | nucleus | 46.13 | 46.13 |
| KRH50011 | Soybean | nucleus | 46.13 | 46.13 |
| KRH20480 | Soybean | endoplasmic reticulum | 44.84 | 45.87 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 42.26 | 45.8 |
| CDX81980 | Canola | nucleus | 47.1 | 45.77 |
| KRH10839 | Soybean | nucleus | 47.42 | 45.65 |
| Solyc03g006510.2.1 | Tomato | plastid | 44.19 | 44.92 |
| Bra031138.1-P | Field mustard | nucleus | 45.48 | 44.62 |
| CDY13859 | Canola | nucleus | 45.48 | 44.62 |
| Solyc02g078540.2.1 | Tomato | nucleus | 47.1 | 44.38 |
| PGSC0003DMT400057639 | Potato | nucleus | 46.77 | 43.94 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 48.06 | 42.69 |
| CDY31939 | Canola | nucleus | 25.81 | 40.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.06 | 40.38 |
| KRH26934 | Soybean | nucleus | 40.65 | 39.01 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 47.1 | 38.93 |
| AT2G20760.1 | Thale cress | nucleus | 41.94 | 38.46 |
| KRH22403 | Soybean | nucleus | 40.65 | 38.41 |
| Bra036500.1-P | Field mustard | nucleus | 25.81 | 38.1 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 46.45 | 36.55 |
| CDY05790 | Canola | nucleus | 18.71 | 34.52 |
| Solyc07g054180.2.1 | Tomato | nucleus | 42.9 | 31.97 |
| PGSC0003DMT400047261 | Potato | extracellular | 42.26 | 30.05 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF20 | EnsemblPlantsGene:TraesCSU01G101000 | EnsemblPlants:TraesCSU01G101000.3 | SEG:seg |
Description
No Description!
Coordinates
chrUn:-:88995570..88998370
Molecular Weight (calculated)
33014.7 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.709
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAFDSPTS SPAAAPFHDD PFLSFADSPT PAAADAHVSG DAFPASPDPY AFRHDSAAAH PFGMPDSNGN GHAMHHDADD DGLFTDPGPV LPDPAQMGAD
101: EGFLLREWRR QNALLLEEKE KHEKELRSQI ILEAEEFKKG FVEKRKLNLE TSKDHNRERE KLFLSNQEKF HKGADKQYWK AISELIPQEI AHIEKRTGKK
201: DKDKKPGIIV VQGPKPGKAT DMARMRQILS KLKHTPPPHM KPPPPPAAAP AGKDGTPAAA GKDGAKAVAT PAAKDAPANG TVPEKENAAP AAAAPAAAAP
301: APPAEPIAAA
101: EGFLLREWRR QNALLLEEKE KHEKELRSQI ILEAEEFKKG FVEKRKLNLE TSKDHNRERE KLFLSNQEKF HKGADKQYWK AISELIPQEI AHIEKRTGKK
201: DKDKKPGIIV VQGPKPGKAT DMARMRQILS KLKHTPPPHM KPPPPPAAAP AGKDGTPAAA GKDGAKAVAT PAAKDAPANG TVPEKENAAP AAAAPAAAAP
301: APPAEPIAAA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.