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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P23720_001 Banana nucleus 33.93 30.65
CDY31939 Canola nucleus 32.74 27.78
GSMUA_Achr1P17650_001 Banana nucleus 26.79 25.42
CDY13859 Canola nucleus 47.62 25.32
TraesCSU01G218200.1 Wheat nucleus 29.76 24.04
CDY61712 Canola nucleus 32.14 22.22
CDX81980 Canola nucleus 41.67 21.94
Zm00001d014898_P001 Maize plasma membrane 35.71 21.13
Os06t0731800-01 Rice nucleus, plasma membrane 36.31 20.96
EER89016 Sorghum nucleus 35.12 20.7
CDY07049 Canola nucleus 28.57 20.69
CDX69783 Canola nucleus 23.21 20.63
GSMUA_Achr3P14280_001 Banana nucleus 34.52 20.28
CDX97081 Canola nucleus 22.02 20.11
Os04t0679100-01 Rice extracellular, plasma membrane, plastid 35.71 19.93
CDY60337 Canola nucleus 30.95 19.7
CDY07629 Canola nucleus 30.95 19.7
TraesCS2D01G564200.1 Wheat nucleus 35.71 19.35
TraesCS2B01G594200.1 Wheat nucleus 35.71 19.35
Zm00001d001814_P001 Maize nucleus 33.93 19.06
TraesCS2A01G590000.2 Wheat nucleus 35.12 18.97
CDX95307 Canola nucleus 27.98 18.73
TraesCSU01G101000.3 Wheat nucleus 34.52 18.71
CDY23170 Canola nucleus 27.98 18.36
AT2G20760.1 Thale cress nucleus 36.9 18.34
EES11661 Sorghum nucleus 32.74 18.27
Zm00001d026630_P001 Maize plasma membrane 32.74 18.03
GSMUA_Achr5P20770_001 Banana cytosol 33.93 17.87
KRH22403 Soybean nucleus 34.52 17.68
GSMUA_Achr11P... Banana nucleus 33.33 17.45
KRH26934 Soybean nucleus 33.33 17.34
HORVU2Hr1G118930.1 Barley cytosol, mitochondrion, nucleus 33.93 16.47
GSMUA_Achr4P26100_001 Banana nucleus 33.93 16.33
GSMUA_AchrUn_... Banana nucleus 33.93 15.45
HORVU7Hr1G119590.1 Barley nucleus, plastid 30.95 14.36
GSMUA_Achr8P11240_001 Banana nucleus 32.74 13.96
PGSC0003DMT400047261 Potato extracellular 33.33 12.84
Solyc07g054180.2.1 Tomato nucleus 31.55 12.74
GSMUA_Achr2P18530_001 Banana cytosol 5.95 10.2
CDY20508 Canola nucleus 27.98 9.96
Protein Annotations
MapMan:35.2GO:A0A078EUR7EnsemblPlants:CDY05790ProteinID:CDY05790ProteinID:CDY05790.1InterPro:Clathrin_L-chain
GO:GO:0003674GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005794GO:GO:0005886GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0016020
GO:GO:0016192GO:GO:0030130GO:GO:0030132EnsemblPlantsGene:GSBRNA2T00120873001PANTHER:PTHR10639PANTHER:PTHR10639:SF8
UniParc:UPI0004EEFA6BSEG:seg::::
Description
BnaC07g00130D
Coordinates
chrLK031964:-:1010154..1011673
Molecular Weight (calculated)
17575.3 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.757
Length
168 amino acids
Sequence
(BLAST)
001: MADVFMSDDN ISEAHPPTQH SLDGDGDFGS ENNPASPNGN DDDALFASDV SGAELIPREA DKKPSVTVIQ GPKPGKPTDL GRMRQIFLKL KTNPPPHMMP
101: PPPPPAKDGK PAAETKGAEE KPASAETAKP EVAAVASGEG EKPVAEAEGA KADVHVNHFD STSYICKT
Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.